Schema for wgEncodeGencodeTranscriptSupportVM36
  Database: mm39    Primary Table: wgEncodeGencodeTranscriptSupportVM36    Row Count: 32,936   Data last updated: 2024-10-17
Format description: GENCODE transcript support from other datasets
On download server: MariaDB table dump directory
fieldexampleSQL type info description
transcriptId ENSMUST00000061280.17varchar(255) values GENCODE transcript identifier
seqId NM_183028varchar(255) values Identifier of sequence supporting transcript
seqSrc RefSeq_dnavarchar(255) values Source of supporting sequence

Connected Tables and Joining Fields
        mm39.wgEncodeGencodeAttrsVM36.transcriptId (via wgEncodeGencodeTranscriptSupportVM36.transcriptId)

Sample Rows
 
transcriptIdseqIdseqSrc
ENSMUST00000061280.17NM_183028RefSeq_dna
ENSMUST00000061280.17CCDS35508.1CCDS
ENSMUST00000029124.8Q3U5U5Uniprot/SPTREMBL
ENSMUST00000027542.13AY267034EMBL
ENSMUST00000027542.13CCDS15221.1CCDS
ENSMUST00000172005.8NM_172853RefSeq_dna
ENSMUST00000172005.8CCDS15221.1CCDS
ENSMUST00000039725.12NM_012012RefSeq_dna
ENSMUST00000039725.12CCDS15551.1CCDS
ENSMUST00000126008.8NM_026430RefSeq_dna

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.