Schema for wgEncodeGencodeUniProtVM36
  Database: mm39    Primary Table: wgEncodeGencodeUniProtVM36    Row Count: 70,498   Data last updated: 2024-10-17
Format description: GENCODE transcript to UniProt peptide mapping
On download server: MariaDB table dump directory
fieldexampleSQL type info description
transcriptId ENSMUST00000000001.5varchar(255) values GENCODE transcript identifier
acc Q9DC51varchar(255) values UniProt/Swiss-Prot accession
name Q9DC51.185varchar(255) values UniProt/Swiss-Prot entry name
dataset SwissProtenum('SwissProt', 'TrEMBL') values UniProt dataset

Connected Tables and Joining Fields
        mm39.wgEncodeGencodeAttrsVM36.transcriptId (via wgEncodeGencodeUniProtVM36.transcriptId)

Sample Rows
 
transcriptIdaccnamedataset
ENSMUST00000000001.5Q9DC51Q9DC51.185SwissProt
ENSMUST00000000003.14O08976O08976.152SwissProt
ENSMUST00000000003.14Q3UV89Q3UV89.131TrEMBL
ENSMUST00000000010.9P20615P20615.174SwissProt
ENSMUST00000000028.14Q3UI99Q3UI99.121TrEMBL
ENSMUST00000000028.14Q9Z1X9Q9Z1X9.150SwissProt
ENSMUST00000000033.12P09535P09535.189SwissProt
ENSMUST00000000049.6Q01339Q01339.179SwissProt
ENSMUST00000000058.7Q9WVC3Q9WVC3.166SwissProt
ENSMUST00000000080.8Q8BPQ2Q8BPQ2.163TrEMBL

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.