Schema for ensGene
  Database: mm7    Primary Table: ensGene    Row Count: 33,902   Data last updated: 2006-05-11
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name ENSMUST00000082908varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 3098897int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 3099007int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 0int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 0int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 3098897,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 3099007,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        knownGeneV39.knownToEnsembl.value (via ensGene.name)
      mm7.ensGtp.transcript (via ensGene.name)
      mm7.ensPep.name (via ensGene.name)
      mm7.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ENSMUST00000082908chr1+309889730990070013098897,3099007,
ENSMUST00000070533chr1-321290336669263212903366692633212903,3417279,3666129,3213850,3417479,3666926,
ENSMUST00000027032chr1-433973443559844340191434841744339734,4347501,4347793,4355791,4345683,4347673,4348429,4355984,
ENSMUST00000027035chr1-448651944920054487307448899854486519,4488691,4489363,4490727,4491882,4488260,4489058,4489455,4491534,4492005,
ENSMUST00000082442chr1+452460845247150014524608,4524715,
ENSMUST00000097195chr1-468471746849960034684717,4684827,4684915,4684825,4684911,4684996,
ENSMUST00000056824chr1+476672247677910024766722,4767014,4767010,4767791,
ENSMUST00000045689chr1-476880247813014772055478126954768802,4773116,4778159,4779542,4781164,4772393,4773240,4778325,4779697,4781301,
ENSMUST00000027036chr1+480345348423284803505484060894803453,4804046,4824175,4825859,4827902,4832592,4834978,4836547,4840554,4803574,4804078,4824241,4825907,4827973,4832666,4835080,4836724,4842328,
ENSMUST00000051711chr1+4803463491429148035054840608114803463,4804046,4824175,4825859,4827902,4832592,4834978,4836547,4840554,4882970,4914250,4803574,4804078,4824241,4825907,4827973,4832666,4835080,4836724,4841433,4883002,4914291,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.