Schema for estOrientInfo
  Database: mm8    Primary Table: estOrientInfo    Row Count: 4,578,823   Data last updated: 2016-06-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 612smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 3620874int(10) unsigned Start position in chromosome
chromEnd 3620972int(10) unsigned End position in chromosome
name AA265416varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 1smallint(6) Number of trailing A's on reverse strand
signalPos 25smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      mm8.all_est.qName (via estOrientInfo.name)
      mm8.est.qName (via estOrientInfo.name)
      mm8.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
612chr136208743620972AA265416001250
612chr136663403666733AA96706400000
613chr137165933717070AA96771601000
613chr137165933717070AA96794800000
619chr144810114481490AA433716000025
619chr144821984482537AA02436600000
619chr144822074482498AA01355600000
619chr144825674483355AA959594-10000
619chr144826894483816AA98050810000
619chr144831794483651AA01472902000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.