Schema for hgBlastTab
  Database: mm8    Primary Table: hgBlastTab    Row Count: 28,519   Data last updated: 2007-03-17
Format description: Blast alignments of Human genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB001539varchar(255) values Name of sequence in this assembly (query)
target uc002pjd.1varchar(255) values Name of sequence in other assembly (target)
identity 91.03float range Percent identity
aliLength 446int(10) unsigned range Length of alignment
mismatch 40int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 446int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 446int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 826double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via hgBlastTab.query)
      knownGeneV39.ceBlastTab.query (via hgBlastTab.query)
      knownGeneV39.dmBlastTab.query (via hgBlastTab.query)
      knownGeneV39.drBlastTab.query (via hgBlastTab.query)
      knownGeneV39.foldUtr3.name (via hgBlastTab.query)
      knownGeneV39.foldUtr5.name (via hgBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via hgBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via hgBlastTab.query)
      knownGeneV39.kgAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgColor.kgID (via hgBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via hgBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via hgBlastTab.query)
      knownGeneV39.kgXref.kgID (via hgBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via hgBlastTab.query)
      knownGeneV39.knownBlastTab.query (via hgBlastTab.query)
      knownGeneV39.knownBlastTab.target (via hgBlastTab.query)
      knownGeneV39.knownCanonical.protein (via hgBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via hgBlastTab.query)
      knownGeneV39.knownCds.name (via hgBlastTab.query)
      knownGeneV39.knownGene.name (via hgBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via hgBlastTab.query)
      knownGeneV39.knownGenePep.name (via hgBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via hgBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via hgBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via hgBlastTab.query)
      knownGeneV39.knownToHprd.name (via hgBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via hgBlastTab.query)
      knownGeneV39.knownToMrna.name (via hgBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via hgBlastTab.query)
      knownGeneV39.knownToMupit.name (via hgBlastTab.query)
      knownGeneV39.knownToPfam.name (via hgBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via hgBlastTab.query)
      knownGeneV39.knownToSuper.gene (via hgBlastTab.query)
      knownGeneV39.knownToTag.name (via hgBlastTab.query)
      knownGeneV39.knownToU133.name (via hgBlastTab.query)
      knownGeneV39.knownToU95.name (via hgBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via hgBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via hgBlastTab.query)
      knownGeneV39.mmBlastTab.query (via hgBlastTab.query)
      knownGeneV39.rnBlastTab.query (via hgBlastTab.query)
      knownGeneV39.scBlastTab.query (via hgBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via hgBlastTab.query)
      mm8.affyGnfU74ADistance.query (via hgBlastTab.query)
      mm8.affyGnfU74ADistance.target (via hgBlastTab.query)
      mm8.affyGnfU74BDistance.query (via hgBlastTab.query)
      mm8.affyGnfU74BDistance.target (via hgBlastTab.query)
      mm8.affyGnfU74CDistance.query (via hgBlastTab.query)
      mm8.affyGnfU74CDistance.target (via hgBlastTab.query)
      mm8.ccdsKgMap.geneId (via hgBlastTab.query)
      mm8.ceBlastTab.query (via hgBlastTab.query)
      mm8.dmBlastTab.query (via hgBlastTab.query)
      mm8.drBlastTab.query (via hgBlastTab.query)
      mm8.dupSpMrna.mrnaID (via hgBlastTab.query)
      mm8.foldUtr3.name (via hgBlastTab.query)
      mm8.foldUtr5.name (via hgBlastTab.query)
      mm8.gnfAtlas2Distance.query (via hgBlastTab.query)
      mm8.gnfAtlas2Distance.target (via hgBlastTab.query)
      mm8.keggPathway.kgID (via hgBlastTab.query)
      mm8.kgAlias.kgID (via hgBlastTab.query)
      mm8.kgProtAlias.kgID (via hgBlastTab.query)
      mm8.kgSpAlias.kgID (via hgBlastTab.query)
      mm8.kgTargetAli.qName (via hgBlastTab.query)
      mm8.kgXref.kgID (via hgBlastTab.query)
      mm8.knownBlastTab.query (via hgBlastTab.query)
      mm8.knownBlastTab.target (via hgBlastTab.query)
      mm8.knownCanonical.transcript (via hgBlastTab.query)
      mm8.knownGene.name (via hgBlastTab.query)
      mm8.knownGeneMrna.name (via hgBlastTab.query)
      mm8.knownGenePep.name (via hgBlastTab.query)
      mm8.knownIsoforms.transcript (via hgBlastTab.query)
      mm8.knownToAllenBrain.name (via hgBlastTab.query)
      mm8.knownToEnsembl.name (via hgBlastTab.query)
      mm8.knownToGnfAtlas2.name (via hgBlastTab.query)
      mm8.knownToKeggEntrez.name (via hgBlastTab.query)
      mm8.knownToLocusLink.name (via hgBlastTab.query)
      mm8.knownToPfam.name (via hgBlastTab.query)
      mm8.knownToRefSeq.name (via hgBlastTab.query)
      mm8.knownToSuper.gene (via hgBlastTab.query)
      mm8.knownToVisiGene.name (via hgBlastTab.query)
      mm8.rnBlastTab.query (via hgBlastTab.query)
      mm8.scBlastTab.query (via hgBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB001539uc002pjd.191.03446400044604460826
AB001750uc002gbm.196.178623300862086201541
AB001926uc003ifm.187.5523328102326068396e-118420
AB003147uc002wpo.165.186722175066306640725
AB003503uc004dpl.190.6859050411597396280992
AB004048uc002xhd.198.6172109819815.0000000000000005e-37149
AB005654uc002miu.198.8543450043404340816
AB005662uc002cml.195.63366160036696413300691
AB006034uc001spz.181.5508931050705080758
AB006329uc001ham.190.076045130595186220939

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.