Schema for xenoMrna
  Database: mm8    Primary Table: xenoMrna    Row Count: 4,606,437   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 9smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 49int(10) unsigned Number of bases that match that aren't repeats
misMatches 6int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 291253int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName LE459281varchar(255) Query sequence name
qSize 201int(10) unsigned Query sequence size
qStart 139int(10) unsigned Alignment start position in query
qEnd 194int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 197069962int(10) unsigned Target sequence size
tStart 3105886int(10) unsigned Alignment start position in target
tEnd 3397194int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 22,33,longblob Size of each block
qStarts 139,161,longblob Start of each block in query.
tStarts 193672768,193964043,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      mm8.all_est.qName (via xenoMrna.qName)
      mm8.all_mrna.qName (via xenoMrna.qName)
      mm8.refGene.name (via xenoMrna.qName)
      mm8.refSeqAli.qName (via xenoMrna.qName)
      mm8.xenoRefFlat.name (via xenoMrna.qName)
      mm8.xenoRefGene.name (via xenoMrna.qName)
      mm8.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
949600001291253+-LE459281201139194chr119706996231058863397194222,33,139,161,193672768,193964043,
60813519001214+-JO458734520364520chr119706996231371143137272354,16,84,364,420,436,193932690,193932744,193932764,
60813016001214+-KA437805461313461chr119706996231371223137272354,16,76,313,369,385,193932690,193932744,193932764,
609502102008124481235+-AK05550924585992447chr119706996231899413191780960,24,30,69,83,34,76,63,165,599,942,976,1084,1527,1775,2102,2195,2282,193878182,193878493,193878557,193878676,193879111,193879358,193879662,193879770,193879856,
6092374500111926247+-JL97696749077478chr1197069962319721632037453106,46,130,77,302,348,193866217,193872569,193872616,
6098115001400++LE011052274173273chr119706996232004473200543251,45,173,228,3200447,3200498,
609825122001390711881++JU53179428427022556chr1197069962320347832053061545,52,32,39,90,27,45,28,132,173,53,21,93,49,68,702,859,1155,1189,1351,1442,1473,1541,1600,1761,1934,1992,2068,2435,2488,3203478,3203635,3203906,3203938,3204084,3204174,3204201,3204270,3204331,3204492,3204666,3204723,3204802,3205187,3205238,
6092303100442240+-JU33838333623326chr119706996232040833204384554,42,48,25,92,23,109,156,208,234,193865578,193865666,193865714,193865762,193865787,
6092303100442240+-JV49370237559362chr119706996232040833204384554,42,48,25,92,59,145,192,244,270,193865578,193865666,193865714,193865762,193865787,
761900225001983014205659+-JV706230296102955chr1197069962320409334118772195,961,77,15,16,14,60,72,51,57,14,122,43,45,140,92,54,42,48,25,82,0,95,1065,1287,1449,1471,1658,1727,1803,2042,2168,2194,2321,2367,2413,2554,2662,2748,2795,2847,2873,193658085,193862913,193863874,193864068,193864428,193864449,193864586,193864656,193864730,193864975,193865092,193865117,19386524 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.