Schema for mrnaOrientInfo
  Database: mm9    Primary Table: mrnaOrientInfo    Row Count: 844,417   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 608smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 3063333int(10) unsigned Start position in chromosome
chromEnd 3064403int(10) unsigned End position in chromosome
name AK016604varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      mm9.all_mrna.qName (via mrnaOrientInfo.name)
      mm9.ccdsInfo.mrnaAcc (via mrnaOrientInfo.name)
      mm9.kgXref.refseq (via mrnaOrientInfo.name)
      mm9.knownToRefSeq.value (via mrnaOrientInfo.name)
      mm9.mgcFullMrna.qName (via mrnaOrientInfo.name)
      mm9.mgcGenes.name (via mrnaOrientInfo.name)
      mm9.orfeomeGenes.name (via mrnaOrientInfo.name)
      mm9.orfeomeMrna.qName (via mrnaOrientInfo.name)
      mm9.refFlat.name (via mrnaOrientInfo.name)
      mm9.refGene.name (via mrnaOrientInfo.name)
      mm9.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
608chr130633333064403AK01660400000
609chr131959843206425AK22042810000
609chr131966033205713AK135172100240
76chr132045623661579AY5342502180410
609chr132061033206963BC16929400000
76chr132069583661430BC16929320000
610chr132994453301159AK08116600000
610chr133558113358630AK04362200000
610chr133656133367869AK13849400000
611chr134243743426842AK08208700000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.