Schema for xenoMrna
  Database: mm9    Primary Table: xenoMrna    Row Count: 4,359,960   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 608smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 135int(10) unsigned Number of bases that match that aren't repeats
misMatches 19int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 2int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 4int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JO458734varchar(255) Query sequence name
qSize 520int(10) unsigned Query sequence size
qStart 364int(10) unsigned Alignment start position in query
qEnd 520int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 197195432int(10) unsigned Target sequence size
tStart 3137114int(10) unsigned Alignment start position in target
tEnd 3137272int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 54,16,84,longblob Size of each block
qStarts 364,420,436,longblob Start of each block in query.
tStarts 194058160,194058214,194058234,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      mm9.all_est.qName (via xenoMrna.qName)
      mm9.all_mrna.qName (via xenoMrna.qName)
      mm9.refGene.name (via xenoMrna.qName)
      mm9.refSeqAli.qName (via xenoMrna.qName)
      mm9.xenoRefFlat.name (via xenoMrna.qName)
      mm9.xenoRefGene.name (via xenoMrna.qName)
      mm9.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
60813519001214+-JO458734520364520chr119719543231371143137272354,16,84,364,420,436,194058160,194058214,194058234,
60813016001214+-KA437805461313461chr119719543231371223137272354,16,76,313,369,385,194058160,194058214,194058234,
6092374500111926247+-JL97696749077478chr1197195432319721632037453106,46,130,77,302,348,193991687,193998039,193998086,
6098115001400++LE011052274173273chr119719543232004473200543251,45,173,228,3200447,3200498,
609825122001390711881++JU53179428427022556chr1197195432320347832053061545,52,32,39,90,27,45,28,132,173,53,21,93,49,68,702,859,1155,1189,1351,1442,1473,1541,1600,1761,1934,1992,2068,2435,2488,3203478,3203635,3203906,3203938,3204084,3204174,3204201,3204270,3204331,3204492,3204666,3204723,3204802,3205187,3205238,
6092303100442240+-JU33838333623326chr119719543232040833204384554,42,48,25,92,23,109,156,208,234,193991048,193991136,193991184,193991232,193991257,
6092303100442240+-JV49370237559362chr119719543232040833204384554,42,48,25,92,59,145,192,244,270,193991048,193991136,193991184,193991232,193991257,
761900225001983014205659+-JV706230296102955chr1197195432320409334118772195,961,77,15,16,14,60,72,51,57,14,122,43,45,140,92,54,42,48,25,82,0,95,1065,1287,1449,1471,1658,1727,1803,2042,2168,2194,2321,2367,2413,2554,2662,2748,2795,2847,2873,193783555,193988383,193989344,193989538,193989898,193989919,193990056,193990126,193990200,193990445,193990562,193990587,19399071 ...
762243257001693511454407+-AB067476344113436chr11971954323204093366100019106,262,200,961,77,60,80,51,60,72,43,45,140,92,54,42,48,25,82,1,110,372,572,1542,2139,2200,2284,2523,2676,2802,2848,2894,3035,3143,3229,3276,3328,3354,193534432,193534538,193783450,193988383,193989344,193990056,193990118,193990200,193990445,193990588,193990713,193990756,19399080 ...
7625622830018105713454523+-AY534241392503902chr11971954323204093366146121171,265,262,200,961,77,15,60,80,51,60,72,43,45,140,92,54,42,48,25,82,0,308,576,838,1038,2008,2230,2605,2666,2750,2989,3142,3268,3314,3360,3501,3609,3695,3742,3794,3820,193533971,193534273,193534538,193783450,193988383,193989344,193989538,193990056,193990118,193990200,193990445,193990588,19399071 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.