Schema for all_mrna
  Database: monDom1    Primary Table: all_mrna    Row Count: 1,682   Data last updated: 2018-12-04
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 906int(10) unsigned range Number of bases that match that aren't repeats
misMatches 33int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 44int(10) unsigned range Number of bases inserted in query
tNumInsert 10int(10) unsigned range Number of inserts in target
tBaseInsert 1053int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AF125540varchar(255) values Query sequence name
qSize 1621int(10) unsigned range Query sequence size
qStart 354int(10) unsigned range Alignment start position in query
qEnd 1337int(10) unsigned range Alignment end position in query
tName scaffold_10501varchar(255) values Target sequence name
tSize 2184int(10) unsigned range Target sequence size
tStart 0int(10) unsigned range Alignment start position in target
tEnd 1992int(10) unsigned range Alignment end position in target
blockCount 11int(10) unsigned range Number of blocks in alignment
blockSizes 52,41,13,85,45,33,18,90,276...longblob   Size of each block
qStarts 284,336,377,434,519,564,597...longblob   Start of each block in query.
tStarts 0,53,95,125,370,600,979,998...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      monDom1.mrnaOrientInfo.name (via all_mrna.qName)
      monDom1.xenoMrna.qName (via all_mrna.qName)
      monDom1.xenoRefGene.name (via all_mrna.qName)
      monDom1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5859063300144101053-AF12554016213541337scaffold_105012184019921152,41,13,85,45,33,18,90,276,280,6,284,336,377,434,519,564,597,615,705,981,1261,0,53,95,125,370,600,979,998,1207,1705,1986,
588344170000614975-AF0497507451362scaffold_1254811547913970104123467123,15,27,19,111,54,12,383,506,521,548,567,678,732,397010,397134,397150,397178,397199,412279,412334,
585667100023471034-AF1350427190711scaffold_1050121846117721032,35,22,59,45,33,18,90,276,67,8,40,107,131,190,235,268,286,376,652,61,94,129,151,370,600,979,998,1207,1705,
585856200013381035-AF12554193518927scaffold_1050121848119921012,35,81,45,33,18,90,276,280,6,8,20,88,169,214,247,265,355,631,911,81,94,129,370,600,979,998,1207,1705,1986,
5857241800005873-KC560794891147889scaffold_1050121843701985645,33,18,90,276,280,2,47,80,98,188,464,370,600,979,998,1207,1705,
5854691000000-AY0578684710470scaffold_10647185299014601470,1,990,
585390000000-AF049761476432471scaffold_106581228371410139,5,371,
585391000000-AF049754472427467scaffold_106581228371411140,5,371,
585400000000-AF049756470425465scaffold_106581228371411140,5,371,
585400000000-AF049757435390430scaffold_106581228371411140,5,371,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.