Schema for xenoRefFlat
  Database: monDom4    Primary Table: xenoRefFlat    Row Count: 323,356   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Olr1710varchar(255) values Name of gene as it appears in genome browser.
name NM_001000886varchar(255) values Name of gene
chrom chr2varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 332524197int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 332649051int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 332524197int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 332649051int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 6int(10) unsigned range Number of exons
exonStarts 332524197,332524497,3326304...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 332524404,332524575,3326305...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      monDom4.xenoMrna.qName (via xenoRefFlat.name)
      monDom4.xenoRefGene.name (via xenoRefFlat.name)
      monDom4.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Olr1710NM_001000886chr2+3325241973326490513325241973326490516332524197,332524497,332630457,332630646,332630787,332648955,332524404,332524575,332630595,332630754,332630829,332649051,
LBRNM_001134061chr7+1853845531853858851853845531853858853185384553,185384838,185385096,185384745,185385050,185385885,
NAB1NM_001133959chr4+20778028920782138620778029320781909420207780289,207788275,207791124,207805995,207812929,207815615,207819004,207819124,207819296,207819359,207819619,207819951,20782009 ...207781112,207788409,207791176,207806043,207813092,207815712,207819103,207819250,207819333,207819516,207819643,207819962,20782012 ...
CLDN12NM_001133960chr8+2587547552587591502587547642587554993258754755,258757743,258759113,258755505,258757760,258759150,
GET3NM_001371488chr3-4292245634292310034292246564292309808429224563,429224655,429224976,429226405,429226708,429226961,429229365,429230819,429224594,429224788,429225174,429226513,429226859,429227110,429229513,429231003,
Fkbp10NM_001163481chr2-19468156219469838119468156519469838110194681562,194683012,194683538,194689011,194690456,194693536,194694158,194694436,194695013,194698193,194681751,194683176,194683681,194689203,194690600,194693726,194694308,194694622,194695159,194698381,
METTL15P1NM_001199422chr5+2633453752634672062633453752634672065263345375,263423228,263430338,263466763,263467158,263345507,263423419,263430517,263467044,263467206,
LOC100190035NM_001245365chr1+1771311936961771311936966177131,177249,189001,189441,189561,193523,177239,177252,189070,189519,189649,193696,
lck.LNM_001097721chr5-2977221002977312812977221002977312815297722100,297722568,297722633,297722906,297731146,297722535,297722628,297722849,297723140,297731281,
LOC100136769NM_001124717chr8+2115808202115853942115808202115853948211580820,211581143,211581524,211581579,211583785,211584231,211584891,211585289,211580996,211581265,211581528,211581788,211583875,211584283,211585063,211585394,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.