Schema for estOrientInfo
  Database: monDom5    Primary Table: estOrientInfo    Row Count: 458   Data last updated: 2011-03-30
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 661smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 10062383int(10) unsigned range Start position in chromosome
chromEnd 10064686int(10) unsigned range End position in chromosome
name DR038220varchar(255) values Accession of EST
intronOrientation -1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      monDom5.all_est.qName (via estOrientInfo.name)
      monDom5.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
661chr11006238310064686DR038220-10000
661chr11006622710077476DR03822220000
662chr11009839710165569DR03822220000
662chr11010574910108031DR038220-10000
662chr11012426610130011DR03822930000
662chr11014667610148978DR038220-10000
1441chr1112235056112235280DR0417320028051
1575chr1129822008129822205DR03823300000
2279chr1222105232222105837DR038230002200
3092chr1328636476328638209DR0382371100330

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.