Schema for mrnaOrientInfo
  Database: monDom5    Primary Table: mrnaOrientInfo    Row Count: 2,937   Data last updated: 2020-08-19
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 850smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 34798524int(10) unsigned range Start position in chromosome
chromEnd 34799629int(10) unsigned range End position in chromosome
name GU048816varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      monDom5.all_mrna.qName (via mrnaOrientInfo.name)
      monDom5.refFlat.name (via mrnaOrientInfo.name)
      monDom5.refGene.name (via mrnaOrientInfo.name)
      monDom5.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
850chr13479852434799629GU04881610000
144chr17508678975119901U915711001240
1427chr1110430884110434922GQ24084320000
1427chr1110430896110434965GU98478820000
1517chr1122228955122229482GU64708000000
1884chr1170335776170336030EU58769701000
1884chr1170335776170336034EU58769401000
1884chr1170335776170336034EU58769501000
1884chr1170335776170336034EU58769800000
1884chr1170335776170336035EU58769601000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.