Schema for all_est
  Database: musFur1    Primary Table: all_est    Row Count: 3,605   Data last updated: 2013-03-06
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 614smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 374int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 2int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 3int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 4019int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AF258318varchar(255) values Query sequence name
qSize 392int(10) unsigned range Query sequence size
qStart 7int(10) unsigned range Alignment start position in query
qEnd 386int(10) unsigned range Alignment end position in query
tName GL897080varchar(255) values Target sequence name
tSize 4141978int(10) unsigned range Target sequence size
tStart 3894077int(10) unsigned range Alignment start position in target
tEnd 3898472int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 19,130,60,3,74,10,23,57,longblob   Size of each block
qStarts 7,26,156,216,220,294,305,329,longblob   Start of each block in query.
tStarts 3894077,3894097,3895984,389...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      musFur1.all_mrna.qName (via all_est.qName)
      musFur1.estOrientInfo.name (via all_est.qName)
      musFur1.intronEst.qName (via all_est.qName)
      musFur1.refGene.name (via all_est.qName)
      musFur1.refSeqAli.qName (via all_est.qName)
      musFur1.xenoMrna.qName (via all_est.qName)
      musFur1.xenoRefGene.name (via all_est.qName)
      musFur1.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6143740023344019+AF2583183927386GL897080414197838940773898472819,130,60,3,74,10,23,57,7,26,156,216,220,294,305,329,3894077,3894097,3895984,3897446,3897449,3898382,3898392,3898415,
58552312000000-GD181141124225560AEYP0110896016527558661211535,682,5586,
585994500339857+GD1833791197411043AEYP011089601652711363132191360,36,114,45,164,136,82,167,74,4,68,30,19,41,102,138,252,297,461,597,679,846,921,925,993,1024,11363,11423,11531,11821,11954,12277,12492,12657,13022,13096,13101,13170,13200,
5858323400116563+GD181497128842909AEYP01108960165271137312802786,114,140,164,136,79,147,42,128,242,382,546,682,762,11373,11531,11726,11954,12277,12492,12655,
5856911200002306-GD18314112240703AEYP0110953210769558165903279,381,43,521,800,1181,5581,6087,6547,
58540800000148-GD184245870397805AEYP01110632515720262482262,346,65,127,2026,2136,
58525910002723579+GD183558120337378AEYP0111249819178261674427,131,99,12,37,65,196,366,826,855,1531,1662,
585224400112333-GD1837781247539768AEYP011127011781269830368,94,66,479,548,642,269,350,764,
5857420150004840-GD18103312190757AEYP011129621645015975138,148,191,166,114,462,600,748,939,1105,0,314,567,1129,1483,
5853745004165293-GD183832148955450AEYP0111296216456473677,10,36,10,148,139,29,1039,1051,1062,1106,1116,1264,1405,64,75,85,128,314,567,707,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.