Schema for xenoRefSeqAli
  Database: myoLuc2    Primary Table: xenoRefSeqAli    Row Count: 437,480   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 89int(10) unsigned range Number of bases that match that aren't repeats
misMatches 14int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 283int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 2967int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001082139varchar(255) values Query sequence name
qSize 464int(10) unsigned range Query sequence size
qStart 70int(10) unsigned range Alignment start position in query
qEnd 456int(10) unsigned range Alignment end position in query
tName AAPE02055386varchar(255) values Target sequence name
tSize 132468int(10) unsigned range Target sequence size
tStart 8354int(10) unsigned range Alignment start position in target
tEnd 11424int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 55,48,longblob   Size of each block
qStarts 70,408,longblob   Start of each block in query.
tStarts 121044,124066,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      myoLuc2.all_mrna.qName (via xenoRefSeqAli.qName)
      myoLuc2.xenoMrna.qName (via xenoRefSeqAli.qName)
      myoLuc2.xenoRefFlat.name (via xenoRefSeqAli.qName)
      myoLuc2.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585891400128312967+-NM_00108213946470456AAPE02055386132468835411424255,48,70,408,121044,124066,
10726761960018134718225583++NM_173683432704219GL42976839494369363938323662228722340,199,1063,147,124,51,75,110,90,63,26,5,80,133,105,21,35,78,41,15,23,48,0,1256,1455,2562,2710,2873,2924,2999,3137,3236,3326,3355,3371,3466,3670,3827,3852,3978,4069,4111,4136,4171,36393832,36599250,36619510,36620615,36620762,36620948,36621000,36621076,36621217,36621314,36621417,36621443,36621469,36621566,36 ...
5858914001283137741+-NM_00108213946470456AAPE020553861324683970077544255,48,70,408,54924,92720,
5872025257004982042051++NM_00326028124172797GL43010912499192944063387392181,64,45,63,75,181,20,108,45,146,141,158,78,250,248,148,151,77,108,11,84,417,498,562,607,670,745,926,946,1054,1099,1245,1388,1548,1626,1876,2124,2272,2423,2500,2616,2713,294406,318458,319159,322771,324130,324407,324943,325085,326967,327550,329417,330378,332051,332916,333605,333981,335904,336670,33 ...
58510627002226269788+-NM_00108209240830389AAPE0205538613246839722109643348,57,28,30,166,361,22825,56625,92718,
585138280021632166+-NM_153812363213231652AAPE020683767677193222643106,26,34,1323,1591,1618,5413,5681,5711,
58580160011521547+-NM_00108272346117265AAPE020553861324689583796480257,39,17,226,35988,36592,
60920642600086951110429++NM_001381966322503019GL4298554679154321846032312131345,54,82,177,90,128,134,146,1385,12,13,13,45,0,321,572,654,831,936,1064,1198,1347,2743,2920,2935,2974,3218460,3218732,3224134,3226341,3227115,3229029,3229160,3229300,3229446,3230839,3231124,3231140,3231168,
585731200197816117++NR_04509619062971360AAPE020557201214171818124383222,63,297,1297,18181,24320,
587476520024662722++NM_0011280955810574GL4300781353821377299380549766,118,87,48,55,112,42,0,67,185,272,320,375,532,377299,378273,378592,380175,380225,380354,380507,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.