Schema for xenoRefFlat
  Database: nomLeu3    Primary Table: xenoRefFlat    Row Count: 238,771   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CTNND1varchar(255) values Name of gene as it appears in genome browser.
name NM_001085458varchar(255) values Name of gene
chrom chr4varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 78165280int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 78227222int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 78197750int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 78224011int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 22int(10) unsigned range Number of exons
exonStarts 78165280,78165403,78195302,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 78165365,78165598,78195421,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      nomLeu3.xenoMrna.qName (via xenoRefFlat.name)
      nomLeu3.xenoRefGene.name (via xenoRefFlat.name)
      nomLeu3.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CTNND1NM_001085458chr4+781652807822722278197750782240112278165280,78165403,78195302,78197656,78200307,78201867,78202818,78208907,78210812,78211851,78213090,78213658,78214113,78215348,78 ...78165365,78165598,78195421,78197945,78200379,78202020,78203354,78209368,78210999,78211969,78213244,78213676,78214182,78215476,78 ...
kcnn1aNM_001128248chr10-56605409566305385660540956630538856605409,56611319,56615046,56616293,56619501,56622913,56629359,56630412,56605553,56611389,56615170,56616408,56619643,56623336,56629451,56630538,
ERLIN1NM_001164032chr3+341788673421659034179267342145492734178867,34179256,34181055,34185917,34186974,34189097,34190985,34197862,34201166,34209012,34211733,34214327,34214720,34214795,34 ...34178930,34179380,34181137,34185964,34187036,34189223,34191059,34197921,34201258,34209102,34211813,34214643,34214783,34214937,34 ...
HDDC3NM_001192956chr6-1100823431100841081100828041100840698110082343,110082420,110082507,110082689,110082786,110083232,110083583,110083957,110082358,110082453,110082605,110082719,110082935,110083473,110083639,110084108,
RPSANM_001195480chr4-1130712941130769651130713621130760677113071294,113071670,113071954,113072737,113075009,113075934,113076942,113071457,113071836,113072083,113072983,113075128,113076100,113076965,
NRG3NM_001205478chr18+389304814007678338930481400764441138930481,38930618,38931264,39429972,39828119,39953464,40040730,40048422,40064591,40069772,40075936,38930524,38931264,38931304,39430102,39828193,39953491,40040833,40048549,40064719,40069943,40076783,
AireNM_001106379chr25+30379519303951783037951930395178930379519,30380059,30380480,30383147,30383978,30385107,30386047,30386270,30395119,30379634,30380234,30380611,30383223,30384092,30385163,30386057,30386390,30395178,
SPINK9NM_001040433chr2-32732148327364183273228732736364432732148,32733380,32735525,32736309,32732333,32733508,32735557,32736418,
ZCWPW2NM_001040432chr4-12417317212434178312417486612427260716124173172,124173464,124173609,124174090,124174333,124178434,124185950,124187086,124187115,124206665,124221033,124255832,12427227 ...124173369,124173507,124174070,124174238,124175028,124178559,124186018,124187115,124187142,124206712,124221151,124255992,12427262 ...
ACVRL1NM_001083479chr8-13245514251313299014250612132455,132702,132958,135337,138747,139502,140420,140932,141234,141656,141789,142453,132656,132884,133125,135468,138945,139778,140567,141032,141448,141786,141907,142513,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.