Schema for intronEst
  Database: oreNil2    Primary Table: intronEst    Row Count: 52,291   Data last updated: 2016-05-25
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 274int(10) unsigned range Number of bases that match that aren't repeats
misMatches 7int(10) unsigned range Number of bases that don't match
repMatches 3int(10) unsigned range Number of bases that match but are part of repeats
nCount 12int(10) unsigned range Number of 'N' bases
qNumInsert 4int(10) unsigned range Number of inserts in query
qBaseInsert 7int(10) unsigned range Number of bases inserted in query
tNumInsert 6int(10) unsigned range Number of inserts in target
tBaseInsert 2755int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AI001578varchar(255) values Query sequence name
qSize 304int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 303int(10) unsigned range Alignment end position in query
tName GL831667-1varchar(255) values Target sequence name
tSize 209826int(10) unsigned range Target sequence size
tStart 2320int(10) unsigned range Alignment start position in target
tEnd 5371int(10) unsigned range Alignment end position in target
blockCount 10int(10) unsigned range Number of blocks in alignment
blockSizes 60,53,14,61,4,6,24,44,6,24,longblob   Size of each block
qStarts 0,60,113,128,189,194,204,22...longblob   Start of each block in query.
tStarts 2320,4921,4975,4989,5051,50...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      oreNil2.all_est.qName (via intronEst.qName)
      oreNil2.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58527473124762755+AI0015783040303GL831667-1209826232053711060,53,14,61,4,6,24,44,6,24,0,60,113,128,189,194,204,229,273,279,2320,4921,4975,4989,5051,5055,5150,5174,5340,5347,
646173200233106+AI0016551890178chrLG101709288780949028095183694,9,20,5,43,4,0,94,103,125,131,174,8094902,8095100,8095110,8095130,8095135,8095179,
6601763010007116-AI0016631890189chrLG101709288798669379867242814,37,7,13,22,37,48,11,0,14,51,58,71,93,130,178,9866937,9866952,9866990,9867107,9867121,9867144,9867182,9867231,
750196022011284-AI00152822910229chrLG12346797062169906121699363320,9,189,0,20,30,21699061,21699163,21699174,
76322422125136113-AI0015122697269chrLG1234679706234104852341084789,26,15,13,7,27,129,23,0,13,39,55,73,80,108,239,23410485,23410499,23410526,23410544,23410564,23410665,23410695,23410824,
7632320191344103-AI0015893062258chrLG1234679706234104942341084967,19,13,29,19,165,48,57,77,90,119,139,23410494,23410506,23410528,23410542,23410665,23410684,
7231882402221588-AI0015752000196chrLG1332787261181636711816545359,51,25,27,82,4,13,65,91,118,18163671,18163681,18163732,18163757,18165371,
6052300232334504-AI0015942620258chrLG143419102326765972677356616,27,66,24,57,65,4,21,48,115,139,197,2676597,2676613,2676641,2676709,2677232,2677291,
662162201132123-AI00152225168236chrLG14341910231013808810138376335,39,91,15,53,92,10138088,10138129,10138285,
725331000111732584+AI0017134680448chrLG15266845561843117418434089449,103,102,77,0,166,269,371,18431174,18432784,18433209,18434012,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.