Schema for mrnaOrientInfo
  Database: oreNil2    Primary Table: mrnaOrientInfo    Row Count: 1,385   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AERX01073294-1varchar(255) values Reference sequence chromosome or scaffold
chromStart 1385int(10) unsigned range Start position in chromosome
chromEnd 1885int(10) unsigned range End position in chromosome
name KP685367varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 18smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 36smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      oreNil2.all_mrna.qName (via mrnaOrientInfo.name)
      oreNil2.refFlat.name (via mrnaOrientInfo.name)
      oreNil2.refGene.name (via mrnaOrientInfo.name)
      oreNil2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AERX01073294-113851885KP6853670180360
585AERX01073294-113852925KP6853681270480
585AERX01073295-113851885KP6853670180360
585AERX01073295-113852925KP6853681270480
585AERX01075077-212981873GQ35586420000
585AERX01076407-2258611GQ38680000000
585AERX01076407-2258611GQ38680100000
585AERX01076407-2258611GQ38680200000
585AERX01076407-2258611GQ38680300000
585AERX01076407-2258611GQ38680400000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.