Schema for xenoMrna
  Database: ornAna1    Primary Table: xenoMrna    Row Count: 8,762,275   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 336int(10) unsigned Number of bases that match that aren't repeats
misMatches 57int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 123int(10) unsigned Number of bases inserted in query
tNumInsert 5int(10) unsigned Number of inserts in target
tBaseInsert 164737int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName AB173358varchar(255) Query sequence name
qSize 2188int(10) unsigned Query sequence size
qStart 443int(10) unsigned Alignment start position in query
qEnd 959int(10) unsigned Alignment end position in query
tName Contig1000varchar(255) Target sequence name
tSize 224754int(10) unsigned Target sequence size
tStart 35753int(10) unsigned Alignment start position in target
tEnd 200883int(10) unsigned Alignment end position in target
blockCount 6int(10) unsigned Number of blocks in alignment
blockSizes 39,3,54,108,93,96,longblob Size of each block
qStarts 443,482,485,602,770,863,longblob Start of each block in query.
tStarts 35753,35843,68710,194293,19...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      ornAna1.all_est.qName (via xenoMrna.qName)
      ornAna1.all_mrna.qName (via xenoMrna.qName)
      ornAna1.refGene.name (via xenoMrna.qName)
      ornAna1.refSeqAli.qName (via xenoMrna.qName)
      ornAna1.xenoRefFlat.name (via xenoMrna.qName)
      ornAna1.xenoRefGene.name (via xenoMrna.qName)
      ornAna1.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
73336570021235164737++AB1733582188443959Contig100022475435753200883639,3,54,108,93,96,443,482,485,602,770,863,35753,35843,68710,194293,198244,200787,
73338570021235164737++BC0103571466415933Contig100022475435753200885639,3,54,108,93,98,415,454,457,574,742,835,35753,35843,68710,194293,198244,200787,
73338570021175164731++AK34467114426281140Contig100022475435754200880638,3,54,108,99,93,628,666,669,786,948,1047,35754,35843,68710,194293,198238,200787,
73338570021175164731++AY60979813816151127Contig100022475435754200880638,3,54,108,99,93,615,653,656,773,935,1034,35754,35843,68710,194293,198238,200787,
73342650021056164719++BC11121516236241136Contig100022475435754200880738,3,54,108,12,99,93,624,662,665,782,890,944,1043,35754,35843,68710,194293,197661,198238,200787,
73307640021354164755++BX93443811975511057Contig100022475435754200880538,57,108,75,93,551,589,709,889,964,35754,68707,194293,198262,200787,
73308630021354164755++CR38556114145421048Contig100022475435754200880538,57,108,75,93,542,580,700,880,955,35754,68707,194293,198262,200787,
7326632001634164830++BC0383031182568929Contig100022475435754200882538,3,54,108,95,568,606,609,726,834,35754,35875,68710,194293,200787,
73337570021235164737++AK29033415936351152Contig100022475435754200885638,3,54,108,93,98,635,673,676,793,961,1054,35754,35843,68710,194293,198244,200787,
73337570021235164737++BC00698216476041121Contig100022475435754200885638,3,54,108,93,98,604,642,645,762,930,1023,35754,35843,68710,194293,198244,200787,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.