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Database: ornAna2 Primary Table: all_est Row Count: 60,610 Data last updated: 2016-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 777 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 90 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 5 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
| strand | - | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | DW586504 | varchar(255) | values | Query sequence name |
| qSize | 250 | int(10) unsigned | range | Query sequence size |
| qStart | 55 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 150 | int(10) unsigned | range | Alignment end position in query |
| tName | chr1 | varchar(255) | values | Target sequence name |
| tSize | 47594283 | int(10) unsigned | range | Target sequence size |
| tStart | 25242003 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 25242098 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 95, | longblob | | Size of each block |
| qStarts | 100, | longblob | | Start of each block in query. |
| tStarts | 25242003, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 777 | 90 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | - | DW586504 | 250 | 55 | 150 | chr1 | 47594283 | 25242003 | 25242098 | 1 | 95, | 100, | 25242003, |
| 777 | 95 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | DW586739 | 272 | 107 | 202 | chr1 | 47594283 | 25242003 | 25242098 | 1 | 95, | 107, | 25242003, |
| 611 | 212 | 8 | 0 | 0 | 0 | 0 | 1 | 2 | - | DW587143 | 277 | 4 | 224 | chr10 | 11243762 | 3465586 | 3465808 | 2 | 13,207, | 53,66, | 3465586,3465601, |
| 611 | 217 | 3 | 0 | 0 | 0 | 0 | 1 | 2 | + | DW587291 | 346 | 59 | 279 | chr10 | 11243762 | 3465586 | 3465808 | 2 | 13,207, | 59,72, | 3465586,3465601, |
| 632 | 165 | 8 | 0 | 0 | 1 | 2 | 0 | 0 | + | DW586976 | 275 | 39 | 214 | chr18 | 6611290 | 6287006 | 6287179 | 2 | 73,100, | 39,114, | 6287006,6287079, |
| 632 | 165 | 8 | 0 | 0 | 1 | 2 | 0 | 0 | - | DW587244 | 303 | 71 | 246 | chr18 | 6611290 | 6287006 | 6287179 | 2 | 73,100, | 57,132, | 6287006,6287079, |
| 600 | 80 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | - | DW586749 | 213 | 57 | 139 | chr2 | 54797317 | 1985519 | 1985600 | 2 | 9,72, | 74,84, | 1985519,1985528, |
| 600 | 54 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | + | DW586565 | 117 | 0 | 56 | chr2 | 54797317 | 1985544 | 1985600 | 3 | 24,4,27, | 0,24,29, | 1985544,1985569,1985573, |
| 830 | 109 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | - | DW586816 | 180 | 69 | 180 | chr2 | 54797317 | 32223319 | 32223430 | 1 | 111, | 0, | 32223319, |
| 587 | 166 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | - | DW586872 | 228 | 0 | 169 | chr20 | 1816412 | 265936 | 266105 | 1 | 169, | 59, | 265936, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server