Schema for estOrientInfo
  Database: oviAri1    Primary Table: estOrientInfo    Row Count: 298,026   Data last updated: 2016-04-13
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 847smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr18varchar(255) values Reference sequence chromosome or scaffold
chromStart 34442672int(10) unsigned range Start position in chromosome
chromEnd 34442839int(10) unsigned range End position in chromosome
name AF071007varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 12smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 37smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      oviAri1.all_est.qName (via estOrientInfo.name)
      oviAri1.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
847chr183444267234442839AF0710070120370
2512chr2252650427252650576AF0710060100300
792chr232719870727198892AF07100503000
792chr232719881627198890AF07100500000
1498chrX119684819119685078AJ24913200000
1288chr19215952792160616BG874282190270
1293chr19281730392817979BG87427100000
1440chr1112134217112164665BG87424630000
180chr1113113630113117817BG87428810000
2532chr1255216985255217330BG87428300000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.