Schema for estOrientInfo
  Database: panTro3    Primary Table: estOrientInfo    Row Count: 17,889   Data last updated: 2016-07-11
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 632smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 6174035int(10) unsigned range Start position in chromosome
chromEnd 6187978int(10) unsigned range End position in chromosome
name AU298520varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      panTro3.all_est.qName (via estOrientInfo.name)
      panTro3.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
632chr161740356187978AU29852030000
632chr161740976186138AU29773420000
632chr161741446186140AU29840020000
632chr161742526187977AU29685430000
652chr188902658898820AU29858750000
652chr188903648898820AU29791950000
652chr188903948898820AU29785750000
652chr188911278898820AU29759330000
652chr188918878898820AU297247200170
652chr188919108898820AU29835830000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.