Schema for xenoRefFlat
  Database: papAnu4    Primary Table: xenoRefFlat    Row Count: 239,647   Data last updated: 2019-05-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName tlx3bvarchar(255) values Name of gene as it appears in genome browser.
name NM_170766varchar(255) values Name of gene
chrom chr6varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 165617671int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 165619813int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 165617671int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 165619813int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 5int(10) unsigned range Number of exons
exonStarts 165617671,165617821,1656179...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 165617728,165617962,1656180...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      papAnu4.xenoRefGene.name (via xenoRefFlat.name)
      papAnu4.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
tlx3bNM_170766chr6+1656176711656198131656176711656198135165617671,165617821,165617992,165618421,165619645,165617728,165617962,165618052,165618661,165619813,
LOC728752NR_036504chr19+31028898310296763102967631029676131028898,31029676,
npffr1l2NM_001171697chr9+59772343597824315977234359782431559772343,59777977,59781812,59781984,59782313,59772560,59778077,59781966,59782122,59782431,
RETNNM_001193374chr19+732684173279337326845732783437326841,7327338,7327703,7326962,7327417,7327933,
DENND1ANM_001352965chr15+108317641137680810831953113750212310831764,10991318,11002995,11082873,11088323,11092585,11128848,11150060,11175434,11200520,11298783,11299245,11301897,11304342,11 ...10831989,10991368,11003115,11082943,11088404,11092644,11128949,11150106,11175536,11200646,11298888,11299333,11301938,11304414,11 ...
TRIP4NM_001328323chr7+387953953883269838795397388325431138795395,38800473,38801590,38804059,38807259,38813132,38816424,38821511,38827254,38832365,38832590,38795498,38800643,38801724,38804272,38807338,38813262,38816640,38821638,38827442,38832551,38832698,
C1H1orf159NM_001133430chr1-511688385952230618261551168,51317,51410,51511,52264,53675,53803,55058,57158,57523,60633,61754,62303,83470,83829,51299,51399,51485,52261,52328,53706,53829,55192,57222,57620,60709,61848,62416,83480,83859,
AGOS_AEL096WNM_210119chr1-76426766277642676627376426,76458,76475,76456,76462,76627,
PRKX-AS1NR_046643chrX+101660710253261025326102532641016607,1024497,1024653,1025176,1016659,1024633,1024711,1025326,
MIR4484NR_106520chr8-1064475221064475661064475661064475661106447522,106447566,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.