Schema for estOrientInfo
  Database: petMar2    Primary Table: estOrientInfo    Row Count: 105,518   Data last updated: 2012-10-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom GL476425varchar(255) values Reference sequence chromosome or scaffold
chromStart 386771int(10) unsigned range Start position in chromosome
chromEnd 392315int(10) unsigned range End position in chromosome
name AA618656varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 3smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      petMar2.all_est.qName (via estOrientInfo.name)
      petMar2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
587GL476425386771392315AA61865603000
585GL4764923429035032AA61864810100
585GL4764927033870622AA61864710000
585GL4764928104281325AA61864710000
586GL476492149380149683AA61864510100
585GL4773791738317682AA61865200000
585GL4774077167271969AA61865300000
586GL477467196107196438AA6186510180420
585GL4783273058533119AA61864910000
585GL48003786078884AA61865500000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.