Schema for estOrientInfo
  Database: ponAbe2    Primary Table: estOrientInfo    Row Count: 46,020   Data last updated: 2011-03-30
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 50858int(10) unsigned range Start position in chromosome
chromEnd 66705int(10) unsigned range End position in chromosome
name CR791558varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      ponAbe2.all_est.qName (via estOrientInfo.name)
      ponAbe2.est.qName (via estOrientInfo.name)
      ponAbe2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr15085866705CR79155820000
585chr1117113117942CR76553510100
586chr1146852147822CR53911710000
595chr114145211415187CR54302600000
597chr117005691701222CR75020600000
597chr117007611701302CR62868300000
600chr119893071990531CR78850620000
600chr120264612048853CR75217920000
601chr121076302108159CR54847600200
601chr121610932173683CR789364-50000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.