Schema for xenoRefFlat
  Database: proCap1    Primary Table: xenoRefFlat    Row Count: 669,761   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName col3a1.Svarchar(255) Name of gene as it appears in genome browser.
name NM_001090075varchar(255) Name of gene
chrom scaffold_2274varchar(255) Reference sequence chromosome or scaffold
strand -char(1) + or - for strand
txStart 15777int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 16955int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 15777int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 16955int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 6int(10) unsigned Number of exons
exonStarts 15777,15907,16082,16221,169...longblob Exon start positions (or end positions for minus strand item)
exonEnds 15865,16019,16197,16264,169...longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      proCap1.xenoRefGene.name (via xenoRefFlat.name)
      proCap1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
col3a1.SNM_001090075scaffold_2274-15777169551577716955615777,15907,16082,16221,16924,16934,15865,16019,16197,16264,16933,16955,
Dhx37NM_001105926scaffold_13198+781099678109931478,1509,3919,4216,5796,6291,7422,8440,8717,8908,9082,9270,10597,10907,337,1621,4026,4405,5921,6408,7595,8555,8855,8910,9175,9344,10695,10996,
STK4NM_001015602scaffold_72718-728774047287740417287,7404,
PAMR1NM_001015591scaffold_13316+33070332503307033250133070,33250,
RBFOX2NM_001349989scaffold_12326+20464206922046420692120464,20692,
RBFOX2NM_001349990scaffold_6603+125003993412500344542712500,15372,18243,22612,32129,32677,34409,34591,34727,34947,35522,35753,35931,36145,36336,36443,37790,37808,37935,37981,38104,38 ...12601,15433,18272,22653,32218,32750,34556,34689,34898,35250,35710,35767,36120,36208,36432,36589,37799,37917,37971,38020,38135,38 ...
RBFOX2NM_001349990scaffold_6182-168303674716830367471216830,18806,19910,20944,21131,22280,22762,26853,28277,29112,31034,36642,16875,18821,19979,20947,21161,22358,22813,26913,28373,29166,31103,36747,
dnai4NM_001113033scaffold_2530+32491752832491752833249,9943,17402,3321,10042,17528,
CPNR_046371scaffold_8244-27885606226062260622827885,31597,34381,45723,49610,53496,58386,60390,28017,31710,34468,45864,49685,53616,58595,60622,
ANO1NM_001378094scaffold_189905-679172167917212679,1607,737,1721,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.