Schema for all_mrna
  Database: pteVam1    Primary Table: all_mrna    Row Count: 4   Data last updated: 2014-03-10
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 972int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 26int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 37813int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName EF682143varchar(255) values Query sequence name
qSize 1002int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1002int(10) unsigned range Alignment end position in query
tName scaffold_235varchar(255) values Target sequence name
tSize 432845int(10) unsigned range Target sequence size
tStart 322046int(10) unsigned range Alignment start position in target
tEnd 360860int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 135,253,114,93,284,122,longblob   Size of each block
qStarts 0,136,389,503,596,880,longblob   Start of each block in query.
tStarts 322046,322181,323894,324727...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      pteVam1.mrnaOrientInfo.name (via all_mrna.qName)
      pteVam1.xenoRefGene.name (via all_mrna.qName)
      pteVam1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
587972326011437813-EF682143100201002scaffold_2354328453220463608606135,253,114,93,284,122,0,136,389,503,596,880,322046,322181,323894,324727,339622,360738,
58510185000042974+EF682149102301023scaffold_32151512451018701058675122,293,93,105,410,0,122,415,508,613,101870,104217,104704,104909,105457,
5851339500118693372+JN695660153001530scaffold_161621978735466401821033,117,173,125,116,165,105,102,204,204,0,33,150,323,448,564,915,1020,1122,1326,35466,36811,37051,37314,37549,37757,38402,38650,39251,39978,
586138000000910539+KF793809138001380scaffold_108626156320372221564110380,135,138,106,201,116,58,8,100,138,0,380,515,653,759,960,1076,1134,1142,1242,203722,206291,208059,209969,212148,213859,213977,214037,215179,215503,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.