Schema for xenoRefFlat
  Database: pteVam1    Primary Table: xenoRefFlat    Row Count: 528,338   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName CNRIP1varchar(255) Name of gene as it appears in genome browser.
name NM_001371608varchar(255) Name of gene
chrom scaffold_6470varchar(255) Reference sequence chromosome or scaffold
strand -char(1) + or - for strand
txStart 66087int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 83312int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 66915int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 83081int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 10int(10) unsigned Number of exons
exonStarts 66087,66278,66407,66541,666...longblob Exon start positions (or end positions for minus strand item)
exonEnds 66188,66332,66527,66631,666...longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      pteVam1.xenoRefGene.name (via xenoRefFlat.name)
      pteVam1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CNRIP1NM_001371608scaffold_6470-660878331266915830811066087,66278,66407,66541,66651,66756,80690,82989,83177,83263,66188,66332,66527,66631,66699,67076,80843,83143,83252,83312,
sugp2.LNM_001096065scaffold_14832+22974238612297423861222974,23765,23094,23861,
Adcy9NM_001371690scaffold_94-2885203032662885203032664288520,301636,302853,303158,288568,301750,302953,303266,
Fut7NM_001289456scaffold_4661+63266635556326663555263266,63414,63413,63555,
ANAPC11NM_001002247scaffold_6304+59127640355965763531859127,59644,63385,63591,63646,63739,63773,63996,59193,59766,63531,63636,63700,63755,63783,64035,
KLF8NM_001324104scaffold_13402-34445350193501935019434445,34679,34809,34910,34466,34736,34894,35019,
TOP1ALPHANM_001203614scaffold_19+166893421668934261668,1710,1794,3553,8261,9266,1695,1743,1848,3631,8314,9342,
HTA12NM_120334scaffold_5438-62659744717415674471262659,74156,62905,74471,
Zfp455NM_001048204scaffold_19790+613066346130663426130,6617,6251,6634,
Olfr297NM_146618scaffold_35202+4039344039342403,862,460,934,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.