Schema for estOrientInfo
  Database: rheMac2    Primary Table: estOrientInfo    Row Count: 68,327   Data last updated: 2012-11-03
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1106smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 68393641int(10) unsigned range Start position in chromosome
chromEnd 68407508int(10) unsigned range End position in chromosome
name AB471888varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      rheMac2.all_est.qName (via estOrientInfo.name)
      rheMac2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1106chr16839364168407508AB47188830000
1106chr16839364168407508AB47188940000
1426chr1110333161110333383AF15945000000
684chr111299669612996856AF07512600000
781chr122575629825756577AF13902700000
986chr125262005952620312AF14888500000
986chr125265303052653592AF14028700000
1255chr128785533687855818AF14029200006
1510chr14121322539121322737AF159161000190
854chr153534710635347486AF07512300000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.