Schema for mrnaOrientInfo
  Database: rheMac3    Primary Table: mrnaOrientInfo    Row Count: 395,448   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 61054int(10) unsigned range Start position in chromosome
chromEnd 61413int(10) unsigned range End position in chromosome
name JU339375varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 7smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      rheMac3.all_mrna.qName (via mrnaOrientInfo.name)
      rheMac3.refFlat.name (via mrnaOrientInfo.name)
      rheMac3.refGene.name (via mrnaOrientInfo.name)
      rheMac3.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr16105461413JU33937500070
585chr16105461810JV70787200070
585chr16105661810JV60703701000
585chr16107861304JV45814900000
585chr16108161547JV49606800000
585chr16108261448JV05287900000
585chr16108961810JV64340400000
585chr16110261440JV67418300000
585chr16113661701JV57247100000
585chr16118561810JV53461100000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.