Schema for xenoRefFlat
  Database: rhiRox1    Primary Table: xenoRefFlat    Row Count: 391,140   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName sh3bp5lvarchar(255) values Name of gene as it appears in genome browser.
name NM_001100250varchar(255) values Name of gene
chrom KN295919v1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 99187int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 112601int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 99187int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 112601int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 7int(10) unsigned range Number of exons
exonStarts 99187,107381,107603,110002,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 99214,107444,107732,110164,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      rhiRox1.xenoRefGene.name (via xenoRefFlat.name)
      rhiRox1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
sh3bp5lNM_001100250KN295919v1+9918711260199187112601799187,107381,107603,110002,111443,112205,112484,99214,107444,107732,110164,111617,112319,112601,
sh3gl3.SNM_001094999KN296487v1+2383623764682383683764687238362,358317,364282,367660,372065,374038,376308,238410,358389,364355,367804,372196,374044,376468,
LOC100527097NM_001251726JABR01184115v1+1844271844271184,427,
LOC100499961NM_001251719KN295096v1+5423455424625423455424621542345,542462,
ccne2.SNM_001095076KN295039v1+4407954521394407954521397440795,440840,445708,448244,448600,450580,452088,440828,440909,445867,448340,448735,450694,452139,
ARL6IP1NM_001133557KN296580v1+61113714576125069876661113,63830,64620,67583,68471,69757,61286,63964,64740,67701,68556,71457,
KLF10NM_001133556KN299574v1+9798149866259830249852844979814,983015,983351,985024,979977,983249,984264,986625,
DESI2NM_001133555KN299427v1+172282517864901722834178330281722825,1763518,1766169,1768803,1783068,1783734,1785260,1785623,1722876,1763591,1766263,1768945,1783717,1785228,1785607,1786490,
LOC100167399NM_001162788KN297086v1-35525381343552538134435525,35758,35971,38089,35675,35890,36076,38134,
LOC100167156NM_001162784KN295996v1+987108998710891987,1089,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.