Schema for ensGene
  Database: rn3    Primary Table: ensGene    Row Count: 28,545   Data last updated: 2004-04-29
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name ENSRNOT00000036411.1varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 8970int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 14807int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 8970int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 14806int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 8970,10768,14683,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 9795,10993,14807,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        knownGeneV39.knownToEnsembl.value (via ensGene.name)
      rn3.ensGeneXref.transcript_name (via ensGene.name)
      rn3.ensGtp.transcript (via ensGene.name)
      rn3.ensPep.name (via ensGene.name)
      rn3.ensTranscript.transcript_name (via ensGene.name)
      rn3.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ENSRNOT00000036411.1chr1+89701480789701480638970,10768,14683,9795,10993,14807,
ENSRNOT00000036403.1chr1+90181646190181645949018,9763,10791,16349,9762,9795,10997,16461,
ENSRNOT00000018764.2chr1+1072771114201072771114204107277,109969,110058,110619,107405,110057,110250,111420,
ENSRNOT00000036113.1chr1+1880491932431880491932432188049,191858,188185,193243,
ENSRNOT00000036120.1chr1+1880551927091880551927093188055,191667,191809,188185,191807,192709,
ENSRNOT00000035525.1chr1-2458872593072458872593073245887,249849,259061,246771,249973,259307,
ENSRNOT00000035562.1chr1-2459022577142459022577143245902,249849,257489,246771,249973,257714,
ENSRNOT00000035488.1chr1+2975773005602975773005604297577,298475,299770,300113,298190,299747,300111,300560,
ENSRNOT00000035318.1chr1-3480003501643480003501642348000,350040,348875,350164,
ENSRNOT00000038026.1chr1+3922544353513922544353515392254,392575,393184,394163,434785,392384,392636,393231,395348,435351,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.