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Database: rn3 Primary Table: est (chr1_est) Row Count: 152,628 Data last updated: 2018-12-26
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 594 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 327 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 1 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
| strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | AA686370 | varchar(255) | values | Query sequence name |
| qSize | 338 | int(10) unsigned | range | Query sequence size |
| qStart | 0 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 328 | int(10) unsigned | range | Alignment end position in query |
| tName | chr1 | varchar(255) | values | Target sequence name |
| tSize | 268121971 | int(10) unsigned | range | Target sequence size |
| tStart | 1301390 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 1301718 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 328, | longblob | | Size of each block |
| qStarts | 0, | longblob | | Start of each block in query. |
| tStarts | 1301390, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 594 | 327 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | + | AA686370 | 338 | 0 | 328 | chr1 | 268121971 | 1301390 | 1301718 | 1 | 328, | 0, | 1301390, |
| 595 | 385 | 5 | 0 | 0 | 1 | 1 | 2 | 2 | + | AA964125 | 391 | 0 | 391 | chr1 | 268121971 | 1399705 | 1400097 | 4 | 134,71,163,22, | 0,134,205,369, | 1399705,1399840,1399912,1400075, |
| 597 | 387 | 3 | 0 | 0 | 1 | 1 | 0 | 0 | - | AA964125 | 391 | 0 | 391 | chr1 | 268121971 | 1697266 | 1697656 | 2 | 24,366, | 0,25, | 1697266,1697290, |
| 600 | 292 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | + | AA894072 | 294 | 0 | 294 | chr1 | 268121971 | 2078857 | 2079151 | 1 | 294, | 0, | 2078857, |
| 601 | 384 | 6 | 0 | 0 | 1 | 1 | 1 | 1 | + | AA964125 | 391 | 0 | 391 | chr1 | 268121971 | 2120874 | 2121265 | 3 | 134,234,22, | 0,134,369, | 2120874,2121009,2121243, |
| 602 | 494 | 0 | 0 | 0 | 0 | 0 | 1 | 440 | + | AA874926 | 494 | 0 | 494 | chr1 | 268121971 | 2236320 | 2237254 | 2 | 9,485, | 0,9, | 2236320,2236769, |
| 602 | 376 | 1 | 0 | 0 | 0 | 0 | 1 | 2 | - | AA859893 | 387 | 0 | 377 | chr1 | 268121971 | 2236336 | 2236715 | 2 | 371,6, | 10,381, | 2236336,2236709, |
| 602 | 333 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | - | AA850307 | 334 | 0 | 334 | chr1 | 268121971 | 2236362 | 2236696 | 1 | 334, | 0, | 2236362, |
| 602 | 332 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | - | AA944608 | 333 | 0 | 333 | chr1 | 268121971 | 2236363 | 2236696 | 1 | 333, | 0, | 2236363, |
| 602 | 295 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | + | AA850306 | 297 | 0 | 297 | chr1 | 268121971 | 2236364 | 2236661 | 1 | 297, | 0, | 2236364, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server