Schema for mgcFullMrna
  Database: rn5    Primary Table: mgcFullMrna    Row Count: 6,924   Data last updated: 2020-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 75smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1067int(10) unsigned range Number of bases that match that aren't repeats
misMatches 43int(10) unsigned range Number of bases that don't match
repMatches 309int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 15int(10) unsigned range Number of bases inserted in query
tNumInsert 6int(10) unsigned range Number of inserts in target
tBaseInsert 331742int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BC079076varchar(255) values Query sequence name
qSize 1459int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1434int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 290094216int(10) unsigned range Target sequence size
tStart 2810604int(10) unsigned range Alignment start position in target
tEnd 3143765int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 345,142,144,123,126,261,137...longblob   Size of each block
qStarts 25,370,512,656,794,920,1181...longblob   Start of each block in query.
tStarts 2810604,2811613,3140491,314...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mgcFullMrna.qName)
      hgFixed.gbSeq.acc (via mgcFullMrna.qName)
      hgFixed.imageClone.acc (via mgcFullMrna.qName)
      rn5.all_mrna.qName (via mgcFullMrna.qName)
      rn5.mgcGenes.name (via mgcFullMrna.qName)
      rn5.mrnaOrientInfo.name (via mgcFullMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
7510674330901156331742-BC079076145901434chr1290094216281060431437658345,142,144,123,126,261,137,141,25,370,512,656,794,920,1181,1318,2810604,2811613,3140491,3141198,3141321,3141708,3143196,3143624,
6112365000118830038-BC0884172427182401chr12900942163432542346494591388,168,217,86,121,105,32,105,143,26,1432,1600,1817,1903,2024,2129,2161,2266,3432542,3433955,3438406,3440237,3440910,3443978,3447045,3448470,3464802,
61112850000078538+BC158756131201285chr1290094216346847434782978165,123,78,181,136,152,123,327,0,165,288,366,547,683,835,958,3468474,3468945,3470028,3470912,3473100,3474541,3475788,3477970,
761833000001039583+BC097929188801833chr12900942163522926356434211183,175,158,181,122,106,159,127,135,127,360,0,183,358,516,697,819,925,1084,1211,1346,1473,3522926,3538208,3540534,3543165,3548837,3551568,3552803,3560850,3561885,3562393,3563982,
6134511070000669727-BC0857884617104591chr12900942163696188377049671492,1165,161,1501,188,40,34,26,1518,2683,2844,4345,4533,4573,3696188,3700847,3702215,3709258,3714001,3770377,3770462,
6383180226000218208+BC083823323503208chr1290094216701842870398443155,2041,1012,0,155,2196,7018428,7031305,7038832,
65116190000023-BC099159164201619chr1290094216867646986780913310,1129,180,23,333,1462,8676469,8676780,8677911,
6531716000001011008-BC079397174301716chr12900942168958290897101411396,201,53,140,128,247,139,88,171,132,21,27,423,624,677,817,945,1192,1331,1419,1590,1722,8958290,8958879,8959409,8959746,8960673,8961655,8962233,8964653,8968771,8970120,8970993,
6551577025000613143+BC078933163001602chr1290094216928705693018017289,188,340,211,191,109,274,0,289,477,817,1028,1219,1328,9287056,9289025,9292771,9293931,9294486,9300146,9301527,
6561416100001139095-BC062046143101417chr12900942169313961935447312202,97,123,71,166,55,67,125,44,82,132,253,14,216,313,436,507,673,728,795,920,964,1046,1178,9313961,9316895,9326617,9327752,9334681,9335758,9335912,9336211,9337726,9343080,9347782,9354220,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.