Schema for mrnaOrientInfo
  Database: sacCer1    Primary Table: mrnaOrientInfo    Row Count: 1,655   Data last updated: 2020-05-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 70879int(10) unsigned range Start position in chromosome
chromEnd 73763int(10) unsigned range End position in chromosome
name E00249varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      sacCer1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr17087973763E0024900000
586chr1139153139256M2609601000
586chr1139679141418GQ87118700000
586chr1142368142470U12981000018
586chr1160274160401K0094800000
586chr1160276160401K0095200000
586chr1165862165989K0094800000
586chr1165864165989K0095200000
586chr1181134181248K0022801000
586chr1181134181248M1080501000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.