Schema for sgdGene
  Database: sacCer1    Primary Table: sgdGene    Row Count: 5,769   Data last updated: 2003-12-31
Format description: GenePred table with proteinID field for WormBase Genes.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name YAL068Cvarchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 1806int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 2169int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 1806int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 2169int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 1806,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 2169,longblob   Exon end positions (or start positions for minus strand item)
proteinID n/avarchar(40) values Swiss-Prot protein ID

Connected Tables and Joining Fields
        sacCer1.choExpDistance.query (via sgdGene.name)
      sacCer1.choExpDistance.target (via sgdGene.name)
      sacCer1.dmBlastTab.query (via sgdGene.name)
      sacCer1.esRegGeneToModule.gene (via sgdGene.name)
      sacCer1.esRegGeneToMotif.gene (via sgdGene.name)
      sacCer1.esRegUpstreamRegion.name (via sgdGene.name)
      sacCer1.hgBlastTab.query (via sgdGene.name)
      sacCer1.mmBlastTab.query (via sgdGene.name)
      sacCer1.rnBlastTab.query (via sgdGene.name)
      sacCer1.sgdAbundance.name (via sgdGene.name)
      sacCer1.sgdBlastTab.query (via sgdGene.name)
      sacCer1.sgdBlastTab.target (via sgdGene.name)
      sacCer1.sgdCanonical.transcript (via sgdGene.name)
      sacCer1.sgdDescription.name (via sgdGene.name)
      sacCer1.sgdIsoforms.transcript (via sgdGene.name)
      sacCer1.sgdLocalization.name (via sgdGene.name)
      sacCer1.sgdPep.name (via sgdGene.name)
      sacCer1.sgdToName.name (via sgdGene.name)
      sacCer1.sgdToPfam.name (via sgdGene.name)
      sacCer1.sgdToSwissProt.name (via sgdGene.name)
      go.goaPart.dbObjectId (via sgdGene.proteinID)
      knownGeneV39.kgProtAlias.alias (via sgdGene.proteinID)
      knownGeneV39.kgSpAlias.spID (via sgdGene.proteinID)
      knownGeneV39.kgXref.spID (via sgdGene.proteinID)
      proteome.spOldNew.acc (via sgdGene.proteinID)
      proteome.spReactomeEvent.spID (via sgdGene.proteinID)
      proteome.spReactomeId.spID (via sgdGene.proteinID)
      sacCer1.sgdCanonical.protein (via sgdGene.proteinID)
      sacCer1.sgdToSwissProt.value (via sgdGene.proteinID)
      uniProt.accToKeyword.acc (via sgdGene.proteinID)
      uniProt.accToTaxon.acc (via sgdGene.proteinID)
      uniProt.citation.acc (via sgdGene.proteinID)
      uniProt.comment.acc (via sgdGene.proteinID)
      uniProt.description.acc (via sgdGene.proteinID)
      uniProt.displayId.acc (via sgdGene.proteinID)
      uniProt.extDbRef.acc (via sgdGene.proteinID)
      uniProt.feature.acc (via sgdGene.proteinID)
      uniProt.gene.acc (via sgdGene.proteinID)
      uniProt.geneLogic.acc (via sgdGene.proteinID)
      uniProt.info.acc (via sgdGene.proteinID)
      uniProt.otherAcc.acc (via sgdGene.proteinID)
      uniProt.protein.acc (via sgdGene.proteinID)
      visiGene.gene.uniProt (via sgdGene.proteinID)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsproteinID
YAL068Cchr1-180621691806216911806,2169,n/a
YAL067W-Achr1+247927072479270712479,2707,n/a
YAL067Cchr1-723590177235901717235,9017,P39709
YAL064W-Bchr1+12046124271204612427112046,12427,O13512
YAL064C-Achr1-13363137441336313744113363,13744,n/a
YAL064Wchr1+21525218522152521852121525,21852,P39711
YAL063C-Achr1-22396226872239622687122396,22687,n/a
YAL063Cchr1-24000279692400027969124000,27969,P39712
YAL062Wchr1+31567329413156732941131567,32941,P39708
YAL061Wchr1+33448347023344834702133448,34702,P39713

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.