Schema for all_mrna
  Database: saiBol1    Primary Table: all_mrna    Row Count: 61   Data last updated: 2016-04-25
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 667smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1530int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 2int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 11int(10) unsigned range Number of bases inserted in query
tNumInsert 12int(10) unsigned range Number of inserts in target
tBaseInsert 3062int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AY665215varchar(255) values Query sequence name
qSize 1543int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1543int(10) unsigned range Alignment end position in query
tName JH378105varchar(255) values Target sequence name
tSize 72162052int(10) unsigned range Target sequence size
tStart 10770275int(10) unsigned range Alignment start position in target
tEnd 10774869int(10) unsigned range Alignment end position in target
blockCount 13int(10) unsigned range Number of blocks in alignment
blockSizes 27,126,159,121,70,189,199,7...longblob   Size of each block
qStarts 0,27,153,312,433,503,692,89...longblob   Start of each block in query.
tStarts 10770275,10770482,10770777,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      saiBol1.mrnaOrientInfo.name (via all_mrna.qName)
      saiBol1.xenoMrna.qName (via all_mrna.qName)
      saiBol1.xenoRefGene.name (via all_mrna.qName)
      saiBol1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6671530002111123062-AY665215154301543JH3781057216205210770275107748691327,126,159,121,70,189,199,78,90,128,151,140,54,0,27,153,312,433,503,692,891,980,1070,1198,1349,1489,10770275,10770482,10770777,10771048,10771608,10771926,10772262,10772576,10772665,10772903,10773226,10774394,10774815,
8363900000011507+DQ1438733900390JH3781057216205232953005329549022159,231,0,159,32953005,32954671,
752372100007121907-U87951237632376JH37810671252344258485927091398177,158,131,145,279,117,167,1199,0,177,335,466,611,890,1007,1174,2584859,2585594,2598369,2601506,2603294,2614241,2618542,2707940,
983542100002589951+AY665243354303543JH37810758292249271174412721093526106,18,106,197,123,171,112,185,132,144,112,167,148,125,30,102,198,71,226,116,205,123,177,132,79,238,0,106,124,230,427,550,721,833,1018,1150,1294,1406,1573,1721,1846,1876,1978,2176,2247,2473,2589,2794,2917,3094,3226,3305,27117441,27119720,27122835,27124969,27126628,27137824,27140332,27149998,27152417,27162135,27164363,27165832,27166093,27168436,27 ...
10220451300001121191-EF692507207602076JH37810854856640305166873053995412216,182,178,149,174,184,197,142,134,124,192,204,0,216,398,576,725,899,1083,1280,1422,1556,1680,1872,30516687,30518670,30519753,30520739,30521184,30521993,30523330,30526401,30526755,30532408,30534993,30539750,
1424712050016376252+AY665246247802478JH37810854856640470411194741984917248,75,72,69,158,143,142,297,24,65,103,189,131,173,244,159,186,0,248,323,395,464,622,765,907,1204,1228,1293,1396,1585,1716,1889,2133,2292,47041119,47112830,47113627,47151078,47160460,47161408,47161976,47162614,47169495,47170994,47171831,47265561,47355870,47363366,47 ...
871625301001538744-AY665223162901629JH3781095079469315040316150806891671,90,108,150,79,65,117,55,80,116,113,91,243,159,63,29,0,71,161,269,419,498,563,680,735,815,931,1044,1135,1378,1537,1600,15040316,15041595,15043350,15046437,15047980,15051426,15052997,15054753,15055031,15055194,15056639,15063245,15068317,15070203,15 ...
7003630000022119+DQ1438723630363JH3781124533110715095914150983963100,185,78,0,100,285,15095914,15097727,15098318,
840144710000965770-AF140759144801448JH37811245331107334476763351489410162,240,186,84,91,157,115,143,145,125,0,162,402,588,672,763,920,1035,1178,1323,33447676,33449214,33451630,33460912,33464958,33471899,33492084,33493106,33509098,33514769,
589148140000613859+AY740614148501485JH378113443111055831625985067420,96,231,23,101,27,587,0,420,516,747,770,871,898,583162,584191,584933,595325,597273,597673,597919,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.