Schema for mrnaOrientInfo
  Database: sarHar1    Primary Table: mrnaOrientInfo    Row Count: 277   Data last updated: 2017-06-13
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1_GL834780_randomvarchar(255) values Reference sequence chromosome or scaffold
chromStart 231564int(10) unsigned range Start position in chromosome
chromEnd 232046int(10) unsigned range End position in chromosome
name KP284829varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      sarHar1.all_mrna.qName (via mrnaOrientInfo.name)
      sarHar1.refFlat.name (via mrnaOrientInfo.name)
      sarHar1.refGene.name (via mrnaOrientInfo.name)
      sarHar1.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586chr1_GL834780_random231564232046KP28482910000
586chr1_GL834780_random246504247017KP28482411000
586chr1_GL834780_random261550261646KP28481701000
585chr1_GL834782_random4708247595KP28481000000
585chr1_GL834782_random4708247624KP28481111000
585chr1_GL834782_random4708247624KP28481211000
585chr1_GL834782_random4708247630KP28481301000
585chr1_GL834782_random4708247630KP28481401000
585chr1_GL834782_random4708247630KP28481501000
585chr1_GL834782_random71426126492KP28482501000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.