Schema for estOrientInfo
  Database: speTri2    Primary Table: estOrientInfo    Row Count: 5,102   Data last updated: 2012-06-11
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AGTP01134759varchar(255) values Reference sequence chromosome or scaffold
chromStart 15984int(10) unsigned range Start position in chromosome
chromEnd 18282int(10) unsigned range End position in chromosome
name CX624358varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 10smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 36smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      speTri2.all_est.qName (via estOrientInfo.name)
      speTri2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AGTP011347591598418282CX6243583100360
585AGTP011347591673217014CX62453910000
585AGTP011347591674917014CX624010100230
585AGTP0114220922103422CX62459700000
585AGTP0114220922933500CX6241780140360
585AGTP0114220931003511CX62459810000
585AGTP0114561718982602CX625111070330
585AGTP01147074512923CX62459810000
585AGTP01150807690825CX72781201000
585AGTP011529010122CX62527200000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.