Schema for estOrientInfo
  Database: strPur2    Primary Table: estOrientInfo    Row Count: 201,045   Data last updated: 2016-04-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Scaffold1varchar(255) values Reference sequence chromosome or scaffold
chromStart 121922int(10) unsigned range Start position in chromosome
chromEnd 124913int(10) unsigned range End position in chromosome
name AF122756varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      strPur2.all_est.qName (via estOrientInfo.name)
      strPur2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Scaffold1121922124913AF12275610000
585Scaffold106620966943AF12224310000
585Scaffold10015644704AF12263800000
585Scaffold10082358147AF12243800000
585Scaffold1008730406AF12262800000
585Scaffold10123153215AF12263800000
585Scaffold101272373504AF12217100000
585Scaffold104185578156212AF12230101000
586Scaffold10419176015187732AF12250520000
585Scaffold104263190931969AF12263800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.