Schema for mrnaOrientInfo
  Database: strPur2    Primary Table: mrnaOrientInfo    Row Count: 35,604   Data last updated: 2020-02-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Scaffold1varchar(255) values Reference sequence chromosome or scaffold
chromStart 119206int(10) unsigned range Start position in chromosome
chromEnd 124902int(10) unsigned range End position in chromosome
name JT115212varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 25smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      strPur2.all_mrna.qName (via mrnaOrientInfo.name)
      strPur2.refFlat.name (via mrnaOrientInfo.name)
      strPur2.refGene.name (via mrnaOrientInfo.name)
      strPur2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Scaffold1119206124902JT115212110250
586Scaffold1164645179911JT0959661500170
587Scaffold1336431351829JT09907510000
587Scaffold1336431357450JT11867210000
587Scaffold1365895368353JT11237020000
587Scaffold1375911382813JT101067500025
588Scaffold1427028454234JT110241100000
588Scaffold1433559436485JT10846020006
588Scaffold1439536454234JT10868290000
588Scaffold1517990518529JT11635400000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.