Schema for xenoMrna
  Database: strPur2    Primary Table: xenoMrna    Row Count: 3,702,553   Data last updated: 2020-09-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 65int(10) unsigned Number of bases that match that aren't repeats
misMatches 16int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 74int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 298881int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JI303919varchar(255) Query sequence name
qSize 482int(10) unsigned Query sequence size
qStart 179int(10) unsigned Alignment start position in query
qEnd 334int(10) unsigned Alignment end position in query
tName Scaffold1varchar(255) Target sequence name
tSize 640699int(10) unsigned Target sequence size
tStart 427int(10) unsigned Alignment start position in target
tEnd 299389int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 30,51,longblob Size of each block
qStarts 179,283,longblob Start of each block in query.
tStarts 341310,640221,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      strPur2.all_est.qName (via xenoMrna.qName)
      strPur2.all_mrna.qName (via xenoMrna.qName)
      strPur2.refGene.name (via xenoMrna.qName)
      strPur2.refSeqAli.qName (via xenoMrna.qName)
      strPur2.xenoRefFlat.name (via xenoMrna.qName)
      strPur2.xenoRefGene.name (via xenoMrna.qName)
      strPur2.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
736516001741298881+-JI303919482179334Scaffold1640699427299389230,51,179,283,341310,640221,
737214002642301829+-JI4177232041210360Scaffold1640699433302348341,15,30,210,306,330,338351,640216,640236,
737214002642301829+-JI4177271983152302Scaffold1640699433302348341,15,30,152,248,272,338351,640216,640236,
73729002642301829+-JI417721471210355Scaffold1640699438302348341,15,25,210,306,330,338351,640216,640236,
73729002642301829+-JI417728413152297Scaffold1640699438302348341,15,25,152,248,272,338351,640216,640236,
73719002642301829+-JI4177221743210354Scaffold1640699439302348341,15,24,210,306,330,338351,640216,640236,
73719002642301829+-JI4177291685152296Scaffold1640699439302348341,15,24,152,248,272,338351,640216,640236,
73942001175402132+-JL802781183016641777Scaffold16406995198407426624,8,17,18,5,24,1664,1688,1696,1730,1748,1753,233273,239697,269797,513343,514128,635477,
731043003834406720++CU232131762321511Scaffold164069924249431076523,20,15,26,23,321,373,393,432,488,24249,127333,142369,261282,431053,
7385300004380758+-AL114336816695783Scaffold164069950229431075523,18,17,9,21,695,718,736,753,762,209624,233276,583003,590011,590449,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.