Schema for intronEst
  Database: susScr11    Primary Table: intronEst    Row Count: 810,974   Data last updated: 2017-09-03
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 1351smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 363int(10) unsigned Number of bases that match that aren't repeats
misMatches 1int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 4int(10) unsigned Number of inserts in target
tBaseInsert 3761int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AA056913varchar(255) Query sequence name
qSize 364int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 364int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 274330532int(10) unsigned Target sequence size
tStart 100445890int(10) unsigned Alignment start position in target
tEnd 100450015int(10) unsigned Alignment end position in target
blockCount 5int(10) unsigned Number of blocks in alignment
blockSizes 62,104,110,44,44,longblob Size of each block
qStarts 0,62,166,276,320,longblob Start of each block in query.
tStarts 100445890,100446517,1004497...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      susScr11.all_est.qName (via intronEst.qName)
      susScr11.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
13513631000043761+AA0569133640364chr1274330532100445890100450015562,104,110,44,44,0,62,166,276,320,100445890,100446517,100449725,100449926,100449971,
9092991157001118+AA0636533286328chr126160274942500102425005422225,97,6,231,42500102,42500445,
108136810400112563+AA06365540329402chr1320833459065117798651307342183,190,29,212,65117798,65130544,
13154010060022545-AA0569074130407chr1320833459095810492958134443134,173,100,6,140,313,95810492,95812126,95813344,
185311301022125880+AA06365739468394chr132083345901177002281177264324208,41,27,48,68,276,318,346,117700228,117726316,117726357,117726384,
164150610311418987+AA0569055121512chr13208334590138431491138450988593,46,153,120,98,1,94,140,293,414,138431491,138434518,138447893,138450768,138450890,
164144700011213285-AA0569064480448chr13208334590138450991138464723483,322,14,28,0,83,406,420,138450991,138452627,138452949,138464695,
1979314102001146+AA06366935215332chr132083345901828151731828156362159,158,15,174,182815173,182815478,
1002218001001628-AA0636563217226chr1414175544654678767546796142147,72,95,242,54678767,54679542,
14284185024652522-AA0636584437438chr14141755446110614475110617422810,8,37,91,105,43,70,61,5,17,26,65,156,261,305,375,110614475,110614486,110614494,110614532,110616471,110616795,110616838,110617361,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.