Schema for xenoMrna
  Database: susScr11    Primary Table: xenoMrna    Row Count: 4,616,884   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 732int(10) unsigned Number of bases that match that aren't repeats
misMatches 73int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 5int(10) unsigned Number of inserts in query
qBaseInsert 229int(10) unsigned Number of bases inserted in query
tNumInsert 10int(10) unsigned Number of inserts in target
tBaseInsert 2326int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JU568675varchar(255) Query sequence name
qSize 1916int(10) unsigned Query sequence size
qStart 294int(10) unsigned Alignment start position in query
qEnd 1328int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 274330532int(10) unsigned Target sequence size
tStart 736int(10) unsigned Alignment start position in target
tEnd 3867int(10) unsigned Alignment end position in target
blockCount 11int(10) unsigned Number of blocks in alignment
blockSizes 24,178,95,80,81,34,27,21,12...longblob Size of each block
qStarts 294,341,519,614,875,956,990...longblob Start of each block in query.
tStarts 736,783,2370,3117,3390,3475...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      susScr11.all_est.qName (via xenoMrna.qName)
      susScr11.all_mrna.qName (via xenoMrna.qName)
      susScr11.refGene.name (via xenoMrna.qName)
      susScr11.refSeqAli.qName (via xenoMrna.qName)
      susScr11.xenoRefFlat.name (via xenoMrna.qName)
      susScr11.xenoRefGene.name (via xenoMrna.qName)
      susScr11.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58573273005229102326++JU56867519162941328chr127433053273638671124,178,95,80,81,34,27,21,124,110,31,294,341,519,614,875,956,990,1023,1047,1171,1297,736,783,2370,3117,3390,3475,3510,3550,3576,3702,3836,
5853538000147432530++JW27229813482101117chr127433053277937424179,98,81,75,210,389,487,1042,779,2367,3117,3667,
5851216000000+-JU9018563750127chr12743305327909171127,0,274329615,
58510338000000+-EZ227933417176317chr12743305327909311141,176,274329601,
58512540000000+-JI018064450131296chr12743305327909551165,131,274329577,
58521012000011409+-JO6265886070222chr12743305327902421251,171,0,51,274328111,274329571,
5852357000011409+-JU7780076240242chr12743305327902441271,171,0,71,274328091,274329571,
58520142000011409+-EZ8438675523246chr12743305327902442272,171,3,75,274328090,274329571,
585163710012111430+-EZ607322385102357chr12743305327902454281,153,102,204,274328078,274329589,
58525313000011409+-JU2436599350266chr12743305327902465295,171,0,95,274328067,274329571,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.