Schema for xenoRefFlat
  Database: susScr2    Primary Table: xenoRefFlat    Row Count: 471,604   Data last updated: 2020-09-01
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Vmn2r90varchar(255) values Name of gene as it appears in genome browser.
name NM_001104539varchar(255) values Name of gene
chrom chr2varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 50554064int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 50557183int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 50554064int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 50557183int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 5int(10) unsigned range Number of exons
exonStarts 50554064,50554167,50554477,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 50554109,50554401,50554491,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      susScr2.xenoMrna.qName (via xenoRefFlat.name)
      susScr2.xenoRefGene.name (via xenoRefFlat.name)
      susScr2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Vmn2r90NM_001104539chr2-50554064505571835055406450557183550554064,50554167,50554477,50554537,50557072,50554109,50554401,50554491,50554921,50557183,
Vmn2r90NM_001104539chr2-51858026521317385185802652131738651858026,51858122,51906247,51906399,52129517,52131636,51858122,51858227,51906363,51906861,52129589,52131738,
EnahNM_001083120chr4+1308456171308947541308947541308947543130845617,130894477,130894730,130845647,130894506,130894754,
EnahNM_001083120chr6-34660528346882083468820834688208334660528,34688049,34688148,34660557,34688074,34688208,
CELF4NM_001353740chr6+1041474801045963011045963011045963015104147480,104147699,104152024,104518072,104596277,104147510,104147718,104152040,104518093,104596301,
CELF4NM_001353740chr6+84359463843595448435946384359544184359463,84359544,
znf1117NM_001327996chr6+30873758314742173087375831474217530873758,30942697,30943165,31079752,31474143,30873851,30942913,30943297,31079855,31474217,
Cacnb4NM_001105733chr10+42902012430582244290201243058224942902012,43004973,43007998,43023294,43024092,43031788,43054444,43056395,43058092,42902136,43005090,43008108,43023378,43024146,43031900,43054596,43056491,43058224,
brinp3a.1NM_001114437chr9+1117579771121070801120565161121070719111757977,112056516,112057727,112057826,112098324,112100855,112106136,112106228,112106708,111758010,112056645,112057772,112057934,112098432,112101038,112106175,112106672,112107080,
si:dkey-71l1.1NM_001114438chr6-35899831359041743589983135904174335899831,35900229,35904075,35899921,35900346,35904174,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.