Schema for xenoRefFlat
  Database: susScr3    Primary Table: xenoRefFlat    Row Count: 477,106   Data last updated: 2020-09-01
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName arf5.Lvarchar(255) values Name of gene as it appears in genome browser.
name NM_001087005varchar(255) values Name of gene
chrom chr2varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 53875482int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 53876607int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 53875721int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 53876607int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 5int(10) unsigned range Number of exons
exonStarts 53875482,53875721,53876041,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 53875557,53875883,53876168,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      susScr3.xenoMrna.qName (via xenoRefFlat.name)
      susScr3.xenoRefGene.name (via xenoRefFlat.name)
      susScr3.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
arf5.LNM_001087005chr2-53875482538766075387572153876607553875482,53875721,53876041,53876272,53876459,53875557,53875883,53876168,53876381,53876607,
sult1c1.LNM_001086905chr3-49935771499824074993577149982407549935771,49980860,49981207,49981727,49982305,49935848,49981044,49981223,49981813,49982407,
sult1c1.LNM_001086905chr3-49940858499460524994085849946052449940858,49941241,49941258,49945947,49940976,49941244,49941338,49946052,
sult1c1.LNM_001086905chr3-49964078500120184996407850012018249964078,50011984,49964169,50012018,
SINHCAFNM_001131846chr11-158750511587656115876561158765611315875051,15875236,15875345,15875429,15875485,15875694,15875775,15875832,15875949,15876031,15876209,15876270,15876306,15875213,15875308,15875363,15875442,15875680,15875719,15875819,15875853,15876012,15876161,15876258,15876297,15876561,
Letm2NM_001364071chr15-55275820552928185527582055290122955275820,55278160,55282394,55283223,55283630,55284744,55289168,55290120,55292776,55275871,55278262,55282509,55283227,55283830,55284882,55289312,55290513,55292818,
Letm2NM_001364070chr15-55275820552928185527582055290122955275820,55278160,55282394,55283223,55283630,55284744,55289168,55290120,55292776,55275871,55278262,55282509,55283227,55283830,55284882,55289312,55290513,55292818,
MAP7NM_001198614chr1-312975493130119431299318313011941131297549,31297784,31297966,31298146,31298250,31298292,31298405,31298560,31298854,31298978,31300968,31297579,31297947,31297992,31298228,31298263,31298366,31298530,31298844,31298966,31299329,31301194,
eef-1GNM_073399chr2+851787585180378517875851803428517875,8517998,8517929,8518037,
RHBDD2NM_001040457GL892833-1+45083550344770455034945083,45263,46988,47447,47868,51615,52308,54622,54956,45158,45294,47068,47866,47871,51760,52313,54853,55034,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.