Schema for all_mrna
  Database: tetNig2    Primary Table: all_mrna    Row Count: 106,231   Data last updated: 2019-09-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 638int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 46int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName CR683322varchar(255) values Query sequence name
qSize 690int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 687int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 22981688int(10) unsigned range Target sequence size
tStart 106851int(10) unsigned range Alignment start position in target
tEnd 107537int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 261,425,longblob   Size of each block
qStarts 3,265,longblob   Start of each block in query.
tStarts 106851,107112,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      tetNig2.mrnaOrientInfo.name (via all_mrna.qName)
      tetNig2.xenoMrna.qName (via all_mrna.qName)
      tetNig2.xenoRefGene.name (via all_mrna.qName)
      tetNig2.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58563824601100-CR6833226900687chr1229816881068511075372261,425,3,265,106851,107112,
586151319245031091717-CR691867178901787chr1229816881648871683811331,26,67,10,555,148,65,174,130,191,139,140,101,2,34,61,128,146,701,849,914,1088,1218,1409,1548,1688,164887,164918,164944,165012,165022,165793,166018,166166,166447,167068,167389,167657,168280,
58615763423901991721-CR729394186001858chr12298168816488716845710137,548,148,65,174,130,191,139,140,177,2,148,696,844,909,1083,1213,1404,1543,1683,164887,165029,165793,166018,166166,166447,167068,167389,167657,168280,
58671012202021622-CR6964699420940chr122981688214055214981554,494,178,154,44,2,70,564,744,898,214055,214109,214604,214782,214937,
58671510206042022-CR7033909530951chr12298168821405521498876,2,46,494,178,186,19,2,9,12,74,568,748,934,214055,214061,214063,214109,214604,214782,214969,
58781412109031091387+CR6360839450945chr122981688283552285874118,113,58,24,92,103,143,131,91,77,95,0,8,125,183,210,302,405,548,682,773,850,283552,283561,283676,284276,284302,284769,285072,285331,285462,285624,285779,
587154221234024121933+CR661017180101801chr1229816882835722873021527,135,118,103,142,131,91,77,94,143,159,93,154,14,316,0,28,163,281,384,526,660,751,828,922,1065,1224,1317,1471,1485,283572,283599,284276,284769,285073,285331,285462,285624,285779,285992,286217,286532,286735,286971,286986,
5871164181670174914840+CR683640139801398chr1229816882850722872612736,14,39,53,95,8,27,27,28,28,77,71,23,143,135,24,45,33,15,53,42,44,14,15,22,130,108,0,37,53,93,146,242,251,284,312,349,377,454,526,549,692,828,852,898,932,947,1010,1062,1106,1120,1136,1159,1290,285072,285108,285123,285162,285331,285426,285434,285462,285489,285525,285624,285779,285850,285992,286217,286352,286532,286577,28 ...
58769806810011-CR7068237670767chr1229816883160963168642761,6,0,761,316096,316858,
58769906810000-CR7100507680768chr1229816883160963168641768,0,316096,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.