Schema for all_mrna
  Database: thaSir1    Primary Table: all_mrna    Row Count: 63   Data last updated: 2018-06-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1976int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 11int(10) unsigned range Number of inserts in target
tBaseInsert 20915int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AY851743varchar(255) values Query sequence name
qSize 5661int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1979int(10) unsigned range Alignment end position in query
tName NW_013657781v1varchar(255) values Target sequence name
tSize 1517906int(10) unsigned range Target sequence size
tStart 369074int(10) unsigned range Alignment start position in target
tEnd 391968int(10) unsigned range Alignment end position in target
blockCount 12int(10) unsigned range Number of blocks in alignment
blockSizes 242,124,168,213,142,64,309,...longblob   Size of each block
qStarts 3682,3924,4048,4216,4429,45...longblob   Start of each block in query.
tStarts 369074,369977,371191,376261...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      thaSir1.mrnaOrientInfo.name (via all_mrna.qName)
      thaSir1.xenoRefGene.name (via all_mrna.qName)
      thaSir1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5871976300001120915-AY851743566101979NW_013657781v1151790636907439196812242,124,168,213,142,64,309,92,129,88,121,287,3682,3924,4048,4216,4429,4571,4635,4944,5036,5165,5253,5374,369074,369977,371191,376261,377171,377876,379819,380579,382435,383603,385416,391681,
5871979000001120915-AY851744566101979NW_013657781v1151790636907439196812242,124,168,213,142,64,309,92,129,88,121,287,3682,3924,4048,4216,4429,4571,4635,4944,5036,5165,5253,5374,369074,369977,371191,376261,377171,377876,379819,380579,382435,383603,385416,391681,
5871977200001120915-AY851745566101979NW_013657781v1151790636907439196812242,124,168,213,142,64,309,92,129,88,121,287,3682,3924,4048,4216,4429,4571,4635,4944,5036,5165,5253,5374,369074,369977,371191,376261,377171,377876,379819,380579,382435,383603,385416,391681,
5871976300001120915-AY851746566101979NW_013657781v1151790636907439196812242,124,168,213,142,64,309,92,129,88,121,287,3682,3924,4048,4216,4429,4571,4635,4944,5036,5165,5253,5374,369074,369977,371191,376261,377171,377876,379819,380579,382435,383603,385416,391681,
73305260000013169139+KJ908903311423114NW_013658040v189474125562742787814162,357,483,118,155,174,123,282,54,138,105,271,142,548,2,164,521,1004,1122,1277,1451,1574,1856,1910,2048,2153,2424,2566,255627,394450,396114,401607,402278,402864,404773,414002,416205,416512,422342,424287,426530,427330,
5875640040032151+KM0661195680568NW_013658040v1894741276978279697454,138,105,271,0,54,192,297,276978,278167,279144,279426,
587279200001278+KJ9088752830281NW_013658040v1894741383160383719296,185,0,96,383160,383534,
5902623900001031045-KJ908936263202632NW_013658040v189474168222771590411916,271,105,138,54,282,123,174,155,121,293,0,916,1187,1292,1430,1484,1766,1889,2063,2218,2339,682227,683337,685185,687225,689261,690034,691448,698837,700099,701033,715611,
58841610000032505+KY426919739146572NW_013658133v17817514865224894534142,74,108,102,146,288,362,470,486522,487318,488992,489351,
5862511000000+KY434666940662914NW_013658359v16111262573952576471252,662,257395,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.