Schema for mrnaOrientInfo
  Database: triMan1    Primary Table: mrnaOrientInfo    Row Count: 1,297   Data last updated: 2018-11-23
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 684smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom JH594607varchar(255) values Reference sequence chromosome or scaffold
chromStart 13030698int(10) unsigned range Start position in chromosome
chromEnd 13036611int(10) unsigned range End position in chromosome
name AF055319varchar(255) values Accession of EST
intronOrientation 4smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      triMan1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
684JH5946071303069813036611AF05531940000
593JH59461510940591149400DQ32360420000
593JH59461511493631149400DQ32360500000
596JH59463415314121532080AY74413410000
604JH59469225349412535657DQ32363320000
604JH59469225356172535657DQ32363400000
659JH59469397283819728471EF53471100000
623JH59473850723265075592DQ32361720000
602JH59474422671042267195EF53471000000
594JH59478012999661305203U0942030000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.