Schema for intronEst
  Database: vicPac1    Primary Table: intronEst    Row Count: 102   Data last updated: 2016-04-24
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 518int(10) unsigned range Number of bases that match that aren't repeats
misMatches 4int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 1155int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName EH219024varchar(255) values Query sequence name
qSize 580int(10) unsigned range Query sequence size
qStart 21int(10) unsigned range Alignment start position in query
qEnd 543int(10) unsigned range Alignment end position in query
tName scaffold_18749varchar(255) values Target sequence name
tSize 7426int(10) unsigned range Target sequence size
tStart 3732int(10) unsigned range Alignment start position in target
tEnd 5409int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 55,41,135,99,74,118,longblob   Size of each block
qStarts 21,76,117,252,351,425,longblob   Start of each block in query.
tStarts 3732,3868,4404,4786,5216,5291,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      vicPac1.all_est.qName (via intronEst.qName)
      vicPac1.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5855184000051155+EH21902458021543scaffold_18749742637325409655,41,135,99,74,118,21,76,117,252,351,425,3732,3868,4404,4786,5216,5291,
58563810240112352+EH2189991016320993scaffold_1903071179791103427,73,131,441,320,348,421,552,79,106,455,662,
5865202000041156+EH21902458021543scaffold_2340197646190019191697555,41,135,99,192,21,76,117,252,351,190019,190155,190691,191075,191505,
587418200001981+ES6089064510420scaffold_1053501859299255300656240,380,0,40,299255,300276,
587418200001981+ES7687904510420scaffold_1053501859299255300656240,380,0,40,299255,300276,
585235100002820-ES7685144723239scaffold_135868144934313993101,107,28,233,334,441,343,860,1371,
585163000001200-ES2635791920163scaffold_16331813005469092129,34,29,158,546,875,
585163000001200-ES6056331920163scaffold_16331813005469092129,34,29,158,546,875,
5856281000032870+ES7688038530629scaffold_1668140127399374924262,209,61,97,0,262,471,532,3993,5925,7213,7395,
5855184000051155+ES44406858021543scaffold_18749742637325409655,41,135,99,74,118,21,76,117,252,351,425,3732,3868,4404,4786,5216,5291,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.