Schema for xenoRefFlat
  Database: vicPac1    Primary Table: xenoRefFlat    Row Count: 632,143   Data last updated: 2020-09-01
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName KITvarchar(255) Name of gene as it appears in genome browser.
name NM_001009837varchar(255) Name of gene
chrom scaffold_3659varchar(255) Reference sequence chromosome or scaffold
strand +char(1) + or - for strand
txStart 112362int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 112590int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 112590int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 112590int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned Number of exons
exonStarts 112362,longblob Exon start positions (or end positions for minus strand item)
exonEnds 112590,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      vicPac1.xenoRefGene.name (via xenoRefFlat.name)
      vicPac1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
KITNM_001009837scaffold_3659+1123621125901125901125901112362,112590,
TMA16NM_001035034scaffold_1832+1845931918011845931918016184593,186597,190260,190329,191621,191738,184633,186748,190303,190333,191708,191801,
Sec14l1NM_001166506scaffold_59576+764411776441172764,4004,893,4117,
GTF2H4NM_001123120scaffold_253995+3318383318382331,738,468,838,
GTF2H4NM_001123120scaffold_4408+481024481024348,746,943,80,794,1024,
hephNM_001260469scaffold_172-38554611313855461131738554,38856,39032,44671,46290,46657,61002,38683,38877,39251,44743,46304,46687,61131,
CLIP-190NM_001273598scaffold_2244+1323682212841323682212842132368,221218,132494,221284,
LOC100499756NM_001248659scaffold_472+17791280501779128050317791,26090,27969,17860,26159,28050,
rpl11NM_001016640scaffold_13215-805185638051856338051,8316,8372,8315,8364,8563,
crtapNM_001016647scaffold_19216-658494896584948936584,9135,9361,6681,9139,9489,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.